Pairwise Alignments

Query, 513 a.a., transcriptional regulator TyrR from Vibrio cholerae E7946 ATCC 55056

Subject, 526 a.a., sigma-54 dependent transcriptional regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  245 bits (626), Expect = 2e-69
 Identities = 155/528 (29%), Positives = 277/528 (52%), Gaps = 26/528 (4%)

Query: 1   MRLEVLCEDRLGLTRELLDILASKSIDLRGIEIDVI---GIIYLNCPDIDFETFSELMAE 57
           ++LE++ +DR+G+  ++  +LA +   +  +E++       +++         F+ L   
Sbjct: 3   LKLELVFKDRVGIVSDVSSLLAGEGYSIVCMEVERRHDRSHVHIEADGAGEGAFAALRQR 62

Query: 58  IRRIPGVKDVRKIQFMPIERHNTELISLLNNLPDAVLAINLKGAVDMANHAAAALFNREE 117
              + G+ + R++Q +P E     +  +L+ + D V++I+  G +   N  A   +    
Sbjct: 63  FESMRGLLECREVQTLPAEERENRIKVVLDTIGDGVMSIDGGGRITSINKVAREAYGCAG 122

Query: 118 SSMIGQQISAL-MPVFNFTRWLEGSK---SRLREDVVLDGLDYVMEIMPVY--ISSDAKQ 171
             +  + +++L +P       L G +   +R      L  L + +   P+   +      
Sbjct: 123 EDVTERSLTSLRLPDHGLLDCLHGRELHDARRELATPLGRLQFFVTRTPIRDGVGRIIGA 182

Query: 172 STLASAMMMLRAANAGLTSTTQIPLQSNLGFEHFVGVSNRHKSLMSQAKKLAMLDQPLLI 231
             +A  M  +R     L     +      GF+  VG     ++ ++ A+++A  D  + I
Sbjct: 183 VEIARDMREIRKLARTLVDADHV------GFDDIVGHHPAIEAAIAFARRVAATDAVIAI 236

Query: 232 EGETGTGKEMLAKACHNRSDRSSAPFLVLSCASMPDDVAETELFGHAPGSFN--HQQGHK 289
            GE+GTGKE+ A+A H  S R   PF+ ++CA++P+ + E+ELFG+  G+F    ++G  
Sbjct: 237 RGESGTGKELFARAMHAESGRKG-PFVPINCAALPEQLLESELFGYERGAFTGGRREGKP 295

Query: 290 GIFEQANGGTVFLDEIGEMSPHLQIKLLRFLQDGTFRRVGEEHEIHVDVRVIASTRHNLA 349
           G+FE A GGTVFLDEIG+M    Q K+LR +Q+   RR+G E E+ VD R+I +T   L 
Sbjct: 296 GLFESARGGTVFLDEIGDMPLASQAKILRVMQEQRVRRIGGEAEVPVDARIITATNRPLE 355

Query: 350 DLAESRRFREDLFYRLNVLTLRIPPLRERPSDVQPLLELFITKHCNKLGMLKPKLTDDLL 409
            + E  RFR+DL+YR+NVL + IPPLRER  D+  L   F+ +  +++G   P  TD  L
Sbjct: 356 RMVEDGRFRQDLYYRINVLPMHIPPLRERRGDIPLLANHFLQQLASRIGGAAPAFTDGAL 415

Query: 410 DKLSQYQWPGNMRQLDNMVLRALTEIEGDVLGIEPFHL-------PQVDSVSSAPSINLD 462
            +L  ++WPGN+R+L N+V RA     G V+  + F L          ++  +A +    
Sbjct: 416 ARLRSHEWPGNVRELKNVVERAAILAGGAVVD-DQFILFSHELGKGVFNAARTASAAGQG 474

Query: 463 GSLDDIMKEYESQVLDRLFQSFPSSRKLAKRLNVSHTSIANKLRDYGI 510
            +L + +  +E ++++ + +  PS RK AK L +SHT++ +K+R +G+
Sbjct: 475 DTLKEQVANFEKKIVEDVVRRAPSIRKAAKILGISHTALLDKMRRHGV 522