Pairwise Alignments

Query, 513 a.a., transcriptional regulator TyrR from Vibrio cholerae E7946 ATCC 55056

Subject, 472 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  204 bits (519), Expect = 6e-57
 Identities = 128/355 (36%), Positives = 193/355 (54%), Gaps = 23/355 (6%)

Query: 175 ASAMMMLRAANAGLTSTTQIPLQSNLGFEHFVGVSNRHKSLMSQAKKLAMLDQPLLIEGE 234
           A  M  LR  N  L S+    L +    +  +G S   + +  Q  ++A  D  +LI GE
Sbjct: 117 ALEMRELRRENQALRSS----LGAGSKADELIGESAPMRRIREQIARVAPTDAWVLITGE 172

Query: 235 TGTGKEMLAKACHNRSDRSSAPFLVLSCASMPDDVAETELFGHAPGSFNHQQGHK-GIFE 293
            GTGKE+ A+A H  S R++ P + ++CA++P+++ E+ELFGH  G+F   +  + G FE
Sbjct: 173 NGTGKELAARAVHAGSQRATRPLVAVNCAAIPEELIESELFGHEKGAFTGAESARTGKFE 232

Query: 294 QANGGTVFLDEIGEMSPHLQIKLLRFLQDGTFRRVGEEHEIHVDVRVIASTRHNLADLAE 353
            A+ GT+FLDEIG+MS   Q K+LR LQ+ +F +VG    I VDVRV+A+T  NL +   
Sbjct: 233 MAHRGTLFLDEIGDMSLKTQAKILRILQEQSFEKVGGTRTIRVDVRVVAATNKNLEEQIA 292

Query: 354 SRRFREDLFYRLNVLTLRIPPLRERPSDVQPLLELFITKHCNKLGMLKPKLTDDLLDKLS 413
              FREDL+YRL V  L +P LRER  D+  LL+ F+ + C          TDD  D L 
Sbjct: 293 QGTFREDLYYRLRVFPLSLPALRERGDDILRLLDAFMLRLCRDHAFAPLTFTDDAQDVLL 352

Query: 414 QYQWPGNMRQLDNMVLRALTEIEGDVLGIEPFH-------LPQVDSVSSAPS-------- 458
           +Y+WPGN+R+L N V R L    G+ + +E           P  DS +   +        
Sbjct: 353 RYRWPGNVRELRNFVERMLILHAGESVDVEDLPPECLRDLSPSSDSATGTAAQSATATCG 412

Query: 459 INLDGSLD--DIMKEYESQVL-DRLFQSFPSSRKLAKRLNVSHTSIANKLRDYGI 510
             +DG LD       +E++ L ++L +   +  +LA+R+ +  + +  KL+ YGI
Sbjct: 413 TGVDGILDFKAARNAFETRFLAEQLQECGGNVSRLAERIGLERSHLHRKLKGYGI 467