Pairwise Alignments

Query, 513 a.a., transcriptional regulator TyrR from Vibrio cholerae E7946 ATCC 55056

Subject, 460 a.a., two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) from Shewanella sp. ANA-3

 Score =  202 bits (513), Expect = 3e-56
 Identities = 128/333 (38%), Positives = 193/333 (57%), Gaps = 19/333 (5%)

Query: 180 MLRAANAGLTSTTQIPLQSNLGFEHFVGVSNRHKSLMSQAKKLAMLDQPLLIEGETGTGK 239
           +LR  N  L     I   S +     +G S   KS+    +++A  +  +LI+GE+GTGK
Sbjct: 134 LLRRENLMLRREVSIGYSSTI-----IGSSEAMKSVKQVIERVAPTNAVVLIQGESGTGK 188

Query: 240 EMLAKACHNRSDRSSAPFLVLSCASMPDDVAETELFGHAPGSFNHQQGHK-GIFEQANGG 298
           E++A+  H  S R   PF+ ++C S+  ++ E+ELFGH  G+F   +G++ G+F  A+GG
Sbjct: 189 ELVARQLHLLSGRQG-PFVPVNCGSIAPELLESELFGHTAGAFTGAKGNREGLFSFASGG 247

Query: 299 TVFLDEIGEMSPHLQIKLLRFLQDGTFRRVGEEHEIHVDVRVIASTRHNLADLAESRRFR 358
           T+FLDEIGEM   +Q  LLR L+    R VG E E+++DVRVIA+T   L D  E+  FR
Sbjct: 248 TIFLDEIGEMPLKMQTALLRVLEQKAIRPVGSEKEVNIDVRVIAATNRTLVDEVEAGNFR 307

Query: 359 EDLFYRLNVLTLRIPPLRERPSDVQPLLELFITKHCNKLGMLKPKLTDDLLDKLSQYQWP 418
            DL+YRLNVL + IPPLRERP DV  L   F  +   +LG+ +   + + + KL Q++WP
Sbjct: 308 RDLYYRLNVLDILIPPLRERPEDVVELTHHFTRQLAAELGVREVVWSHEDMVKLQQHEWP 367

Query: 419 GNMRQLDNMVLRALTEIEGDVLGIEP--FHLPQVDSVSSA-PSINLDGSLDDIMKEYESQ 475
           GN+R+L NM+ R +      +LG  P  +   QV + SSA     LD  L ++ K + + 
Sbjct: 368 GNIRELRNMIERCI------LLGKPPAEYWKQQVKTESSASQGYPLDWPLKEVEKHHVTS 421

Query: 476 VLDRLFQSFPSSRKLAKRLNVSHTSIANKLRDY 508
           V+D L     S+   A+ L VS  ++  K +++
Sbjct: 422 VVD-LHSGNKSA--AARDLGVSRKTLDRKYKEW 451