Pairwise Alignments

Query, 339 a.a., TIGR01620 family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 364 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

 Score =  178 bits (451), Expect = 2e-49
 Identities = 113/340 (33%), Positives = 191/340 (56%), Gaps = 14/340 (4%)

Query: 4   LKTKQIFSEPLQGSLETPSLTAQQQFSAQEKFVPMN---MEVPAEEALEAELDTIIR--P 58
           ++ KQ+F EP Q +L    L A ++F  Q  F       ++  A +AL  ELD I+   P
Sbjct: 8   IEKKQVF-EPEQ-ALSVTELKAAERFDDQVVFEDAERGELDEAALQALVPELDGIVSRSP 65

Query: 59  SKGRK----WFAGGLFAAFSGLVAWQAIDSVVQAIQDLDWLSLGWVGFISALATLGLGAI 114
           S  R+    W A         ++  +   ++ +A     WL  G  G ++ + +L    +
Sbjct: 66  SGARRRSWSWLAKASLLGIGSILLVELGLTLREAWAQSPWL-FGLYGSVTTIVSLWAITL 124

Query: 115 AKELWK-LRRLRQHFSVQEQAQILMENDAVCQGQAFCEQIAKQGKVDKQGYQRWLSALNS 173
             + W+ LRRLR     Q  ++ L ++    +   F +++      D     R+   ++ 
Sbjct: 125 GVKEWRQLRRLRAVEEAQAVSERLSQSMQRGEADKFIDRLITNLPEDIDT-NRYYRLVHE 183

Query: 174 SHSDAEILDLYDALVVGEQDKQASQIVTRYATEAAALVAISPLAIADMLLVAWRNFSMVD 233
            H+DAE L L+++ V+ + D +A ++V RYA+E+A L+A SP+A+ DM ++ WRN  M+ 
Sbjct: 184 EHNDAERLILFESSVLPQVDAKAKKLVHRYASESALLLAASPIAVLDMAIILWRNQKMIA 243

Query: 234 QLAKVYGVELGYWSRIKLFKAVLLNMALAGASELAVDASVDLFSMDLAGRLSARAGQGVG 293
           +LA+ YG+ELGYWSRIKL ++V+ N+  AG SE+  D    LFS++++G++SAR  QG+G
Sbjct: 244 ELARCYGIELGYWSRIKLIRSVITNIIYAGTSEIVTDIGTQLFSLEMSGKISARLAQGLG 303

Query: 294 VGILTARLGIKAVGLLRPLPWHPDRQLKLSAVRKQVVSKV 333
            G+LTARLG + + L RP+ + PD + KLS +   ++ ++
Sbjct: 304 GGLLTARLGYQTMRLCRPVVFTPDSRPKLSKIHTALLGEL 343