Pairwise Alignments

Query, 417 a.a., serine transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 423 a.a., aromatic amino acid permease (RefSeq) from Shewanella loihica PV-4

 Score =  457 bits (1176), Expect = e-133
 Identities = 231/421 (54%), Positives = 298/421 (70%), Gaps = 6/421 (1%)

Query: 2   NTTTAATSTARSASKWTYKDFTWALSLFGTAVGAGVLFLPIKAGAGGFWPLVLLALIAAP 61
           N  T +         WT  D TW LSLFGTAVGAG+LFLPI AG GGFWPLVL+A+I  P
Sbjct: 3   NEATISDVNLAQRQGWTRSDTTWMLSLFGTAVGAGILFLPINAGMGGFWPLVLMAVIIGP 62

Query: 62  MTWFAHKSLARFVLSAKNPDADITDTVEEHFGKAGANLITFAYFFAIYPIVLIYGVGITN 121
           MT+ AH+ L+RFV S++   +DIT  VEE+FG      IT  YFFAIYPIVLIYGVGITN
Sbjct: 63  MTYLAHRGLSRFVCSSQRQGSDITHVVEEYFGVGAGKAITLLYFFAIYPIVLIYGVGITN 122

Query: 122 TVDSFLVNQIGMESIPRWLLSGALITAMTAGVVFGKELMLKATSAMVYPLVFILLALSFY 181
           TVDSF+VNQ+GM S PR+LLSG L+  M + +V G++ MLK T  +VYPLV IL  +S Y
Sbjct: 123 TVDSFIVNQLGMASPPRFLLSGILVLGMMSVMVSGEKFMLKVTQLLVYPLVGILAFMSLY 182

Query: 182 LIPDWNTSMMEVAPDWSAMPAIVWLAIPIIVFSFNHSPIISQFSKEQRQQFGDKAVQKTD 241
           LIP W    +   P        VWL IP++VF+FNHSP ISQFS   ++Q+G  A +K D
Sbjct: 183 LIPSWKMDALMEVPAAGEFLGTVWLTIPVLVFAFNHSPAISQFSVSLKKQYGSNAAKKAD 242

Query: 242 MITGGAAMMLMGFVMFFVFSVVLSLSPAELAMAKEQNISVLSYLANEHASPIISYLGPIV 301
           +I    +MML+GFVM FVFS VLSLSPA+LA AK QN+ +LSYLAN HAS  +SY GPI+
Sbjct: 243 VILRNTSMMLVGFVMLFVFSCVLSLSPAQLAEAKAQNLPILSYLANVHASGFVSYFGPII 302

Query: 302 AFAAITSSYFGHFLGAHEGLVGLVKSR---SNMQVS--KIEKISLGFIVITTWIVAIVNP 356
           A  AI SS+FGH+LGA EGL G++  +   SN +VS  KI+K  LGF+ +T W VA++NP
Sbjct: 303 AVIAIVSSFFGHYLGATEGLKGIITKQLRSSNKEVSDAKIDKFILGFMFLTIWGVAVINP 362

Query: 357 SILGMIETMGAPMIAAILFLLPVFAMHKVPAMAKFKTSAPVQIFTVICGLAAISSVIYGA 416
           SILGMIE +G P+IAAIL+L+P++A++KVPA+  ++      I  ++ GL A++++++G 
Sbjct: 363 SILGMIEALGGPIIAAILYLMPMYAVYKVPALKAYRGRIS-NILVILAGLLAMTAILFGM 421

Query: 417 L 417
           L
Sbjct: 422 L 422