Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 612 a.a., Methyl-accepting chemotaxis protein from Pseudomonas fluorescens FW300-N2E2

 Score =  158 bits (400), Expect = 5e-43
 Identities = 108/374 (28%), Positives = 183/374 (48%), Gaps = 6/374 (1%)

Query: 159 LGVIRLEFNLNHLTQMVNHRTLIGVGIMSVIALFGFMLTLFFMRRIIVLPLQKTSAFMCE 218
           +G+I     ++  T+M    TLI VG ++VI    F L      + IV P+ + S  +  
Sbjct: 242 IGLIERSEVMSAATRMTYLTTLI-VGGLTVI----FALVAVAFSKSIVKPISQVSTGLQS 296

Query: 219 VSKSK-DLSHRLENDRKDELGQLAVSINSLMDTVSDSLQQVQDTSHSLADSAKKLTNVAQ 277
           +++ + DL   LE    DE  +LA   N  +  +   +Q +   S +L ++++  + VA 
Sbjct: 297 IAQGEGDLRRELEFQGNDETAELAGWFNKFLSAIRQLIQHIGAASSNLQNASRVNSEVAN 356

Query: 278 VTDQAANNQQKETAEVQTNITDMQGKQQQVEFATEEASKLVNHTTSIVQQSAKQAHAASE 337
             ++AA  Q++    V T   +M     +V  +   A++   +    V +  +Q    ++
Sbjct: 357 NMNEAAGRQREAVELVSTAFNEMVATANEVARSCSGAAESAENGHRRVAEGKQQIEITTD 416

Query: 338 DIKNLVGDIEAVKQRIVELNNQTGQVSSILGVIKGIAEQTNLLALNAAIEAARAGEQGRG 397
           ++  L   +    Q + EL   +  ++ ILG I+ IAEQTNLLALNAAIEAARAG+QGRG
Sbjct: 417 NVNRLGRRLTESSQSMTELEAGSRSINQILGTIRAIAEQTNLLALNAAIEAARAGDQGRG 476

Query: 398 FAVVADEVRHLASRTTEATGNIENIIAGFQRDSQASLSSVDTVCSHAHQRSSEVEELSAA 457
           FAVVADEVR LA RT+++TG IE ++      +Q  +  + +    +H   S +E    +
Sbjct: 477 FAVVADEVRALAKRTSDSTGEIEQLLGALGSKTQEVMGKMGSCLELSHASVSSIESTRDS 536

Query: 458 MTRVVSEMQQVLSHAMGIQEQTKRTTEVSHEIQNKVDVITHHANNTSQSASETREISIDL 517
              +   + ++    + I    +    V+ EI   +  I   A      A+  ++ S  L
Sbjct: 537 FEGIQLSVNEIRDQNLQISAAAEEQHSVAEEINRHIQQIYDEARLVESLANSAQDDSGKL 596

Query: 518 EHLSQQLESLLNQF 531
             LS +L  L+ +F
Sbjct: 597 SSLSDELNGLVGRF 610



 Score = 25.4 bits (54), Expect = 0.007
 Identities = 20/133 (15%), Positives = 50/133 (37%), Gaps = 7/133 (5%)

Query: 240 LAVSINSLMDTVSDSLQQVQDTSHSLADSAKKLTN-------VAQVTDQAANNQQKETAE 292
           +A  + +L    SDS  +++    +L    +++         ++  +  +  + +     
Sbjct: 480 VADEVRALAKRTSDSTGEIEQLLGALGSKTQEVMGKMGSCLELSHASVSSIESTRDSFEG 539

Query: 293 VQTNITDMQGKQQQVEFATEEASKLVNHTTSIVQQSAKQAHAASEDIKNLVGDIEAVKQR 352
           +Q ++ +++ +  Q+  A EE   +       +QQ   +A        +   D   +   
Sbjct: 540 IQLSVNEIRDQNLQISAAAEEQHSVAEEINRHIQQIYDEARLVESLANSAQDDSGKLSSL 599

Query: 353 IVELNNQTGQVSS 365
             ELN   G+  S
Sbjct: 600 SDELNGLVGRFKS 612