Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 522 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  156 bits (395), Expect = 2e-42
 Identities = 108/338 (31%), Positives = 169/338 (50%), Gaps = 23/338 (6%)

Query: 201 MRRIIVLPLQKTSAFMCEVSKSKDLSHRLENDRKDELGQLAVSINSLMDTVSDSLQQVQD 260
           ++R++ L  Q TS           L  R+  D +    QL +++ S    +   L ++QD
Sbjct: 199 LKRLLQLASQTTS---------DPLIARMYTDSRGVEAQLEMAMLSQQAHLKTCLTRLQD 249

Query: 261 TSHSLADSAKKLTNVAQVTDQAANNQQKETAEVQTNITDMQGKQQQVEF-------ATEE 313
           T+  L   AK+  ++AQ        Q +ET +V T I +M    Q+V         AT E
Sbjct: 250 TAVQLQGQAKQADSLAQSCANGLAQQNQETEQVATAINEMAATTQEVASNVALAAEATRE 309

Query: 314 ASKLVNHTTSIVQQSAKQAHAASEDIKNLVGDIEAVKQRIVELNNQTGQVSSILGVIKGI 373
           AS+L  H   +  ++ K        I+ L   + +  + + +L N +  +  ++ VIK I
Sbjct: 310 ASRLTIHGREVTAETRKA-------IQQLADSVASTGEAVNQLANDSDAIGGVVDVIKSI 362

Query: 374 AEQTNLLALNAAIEAARAGEQGRGFAVVADEVRHLASRTTEATGNIENIIAGFQRDSQAS 433
           A+QTNLLALNAAIEAARAG+ GRGFAVVADEVR LA RT EATG I  +I   Q  ++ +
Sbjct: 363 ADQTNLLALNAAIEAARAGDSGRGFAVVADEVRQLAQRTAEATGEIHQLIEKLQLQARHA 422

Query: 434 LSSVDTVCSHAHQRSSEVEELSAAMTRVVSEMQQVLSHAMGIQEQTKRTTEVSHEIQNKV 493
           + + +     A +   +V +   A+T +   M  ++     I   T+  + V+ EI N V
Sbjct: 423 VQTTEEGRVQATRGVDQVAQADQALTGINEAMGNIIDMTTQIASATEEQSAVADEISNNV 482

Query: 494 DVITHHANNTSQSASETREISIDLEHLSQQLESLLNQF 531
             I   A+ TS  A  +  +S DL   ++   +L+ +F
Sbjct: 483 STIARLADQTSGDARSSALLSEDLAATAEGQYALVERF 520