Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 544 a.a., Methyl-accepting chemotaxis protein from Pseudomonas stutzeri RCH2

 Score =  158 bits (399), Expect = 6e-43
 Identities = 158/550 (28%), Positives = 253/550 (46%), Gaps = 50/550 (9%)

Query: 10  LLTLITVFALVLAGSTSYQYWQQKDLIHSVLSEQLH--DKASNYFDSLNMMMLTGTMAQK 67
           L+ ++ V  L + G    Q   + DL         H  + AS  F+    + L+G M   
Sbjct: 15  LIPVVAVVMLFILGLLMIQQ-VRSDLYRGKQESTRHVVEAASGVFEHYRKLELSGAMTTA 73

Query: 68  ETLRQKALAQDGIEQVRVIRAPSLNKIY----GPGSTDQQPKDEIDQRAL------QGET 117
           E   QKA     IEQ+R++R    +  +    GP       + ++D + L      +G+ 
Sbjct: 74  EA--QKA----AIEQIRLLRYDGQDYYWINDLGPTMIMHPMQPKLDGQDLSKIKDPEGKE 127

Query: 118 IIEPY----QADWGKGIVVALPMKSSENYRGTNCVACHI-APEGEVLGV------IRLEF 166
           +        Q D G G+V  +  K  E           +  P G ++G       +  EF
Sbjct: 128 LFNEMVRIAQRD-GAGLVDYMWAKPGEENPVPKISYVQLFKPWGWIIGSGIYVDDVEQEF 186

Query: 167 NLNHLTQMVNHRTLIGVGIMSVIALFGFMLTLFFMRRIIVLPLQKTSAFMCEVSKSK-DL 225
             N+LT+     +LIG+ I +++A+   +L      R IV PL+ T A M  ++  + DL
Sbjct: 187 -WNYLTRF----SLIGLLISAIMAVLVAILI-----RSIVRPLRHTMAAMANIASGEADL 236

Query: 226 SHRLENDRKDELGQLAVSINSLMDTVSDSLQQVQDTSHSLADSAKKLTNVAQVTDQAANN 285
           +  L+    DEL  L    N     +   + Q+ +T+ +L  S++ L+ ++    + +  
Sbjct: 237 TRTLDVSGNDELTTLGRDFNRFTQKLRTVVGQLFETAGALDQSSRSLSQLSGQAHEQSQQ 296

Query: 286 QQKETAEVQTNITDMQGKQQQVEFATEEASKLVNHTTSIVQQSAKQAHAASEDIKNLVGD 345
           Q  +  +V T I ++    Q+V    E AS  V    +   Q  +    + + I  L   
Sbjct: 297 QMLQMEQVATAINEVTYAVQEVAKNAEHASSEVGSAENQAGQGQRNIETSLQQIDELSAT 356

Query: 346 IEAVKQRIVELNNQTGQVSSILGVIKGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEV 405
           I      I  L ++T ++ S+L VI  IAEQTNLLALNAAIEAARAGEQGRGFAVVADEV
Sbjct: 357 IGQAVDVIQSLADETTKIGSVLEVIGSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEV 416

Query: 406 RHLASRTTEATGNIENIIAGFQRDSQASLSSVDTVCSHAHQRSSEVEELSAAMTRVVSEM 465
           R LA RT ++T  I  +I   Q++S A+++    V   +++ S    E ++     + E+
Sbjct: 417 RLLAQRTQQSTAEIHGMIERLQKNSGAAVN----VIMESNRASQLTVEQASQAGESLGEI 472

Query: 466 QQVLSHAMG----IQEQTKRTTEVSHEIQNKVDVITHHANNTSQSASETREISIDLEHLS 521
            Q L +  G    I   T + + V  +I   V      A  ++ +A ++ E    L  L+
Sbjct: 473 AQALRNLSGLNASIASATLQQSHVVEDINQNVTQAAGLAQESTLAAEQSSEAGKQLGELA 532

Query: 522 QQLESLLNQF 531
            QL  LL+QF
Sbjct: 533 GQLNRLLSQF 542



 Score = 28.5 bits (62), Expect = 7e-04
 Identities = 32/172 (18%), Positives = 67/172 (38%), Gaps = 20/172 (11%)

Query: 363 VSSILGVIKGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRHLASRTTEATGNIENI 422
           ++++  +  G A+ T  L ++   E    G   R F     ++R +  +  E  G ++  
Sbjct: 223 MAAMANIASGEADLTRTLDVSGNDELTTLG---RDFNRFTQKLRTVVGQLFETAGALDQ- 278

Query: 423 IAGFQRDSQASLSSVDTVCSHAHQRSSEVEELSAAMTRVVSEMQQVLSHAMGIQEQTKRT 482
                     S  S+  +   AH++S   ++    M +V + + +V      +QE  K  
Sbjct: 279 ----------SSRSLSQLSGQAHEQS---QQQMLQMEQVATAINEV---TYAVQEVAKNA 322

Query: 483 TEVSHEIQNKVDVITHHANNTSQSASETREISIDLEHLSQQLESLLNQFTLI 534
              S E+ +  +       N   S  +  E+S  +      ++SL ++ T I
Sbjct: 323 EHASSEVGSAENQAGQGQRNIETSLQQIDELSATIGQAVDVIQSLADETTKI 374