Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 526 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  155 bits (392), Expect = 4e-42
 Identities = 98/326 (30%), Positives = 166/326 (50%), Gaps = 1/326 (0%)

Query: 206 VLPLQKTSAFMCEVSKSKDLSHRLENDRKDELGQLAVSINSLMDTVSDSLQQVQDTSHSL 265
           +LPL + +    +V  +  +S  +   R+DE+GQ+  ++  L       + ++ D+S  L
Sbjct: 196 LLPLSRLARQARQVGDNP-VSQLIYTGRRDEIGQIEFAMKMLETEAGAMVGRIADSSRQL 254

Query: 266 ADSAKKLTNVAQVTDQAANNQQKETAEVQTNITDMQGKQQQVEFATEEASKLVNHTTSIV 325
           +D A+ L      + Q+A  QQ+ET  + T I  M    Q+V    +  +++     S  
Sbjct: 255 SDHARDLLGAMHGSTQSAARQQQETDLIATAIQQMSASVQEVALNAQRTAEVAARADSEA 314

Query: 326 QQSAKQAHAASEDIKNLVGDIEAVKQRIVELNNQTGQVSSILGVIKGIAEQTNLLALNAA 385
            +  +        I  L  DI+   + I +L N + ++S +L VI GIAEQTNLLALNAA
Sbjct: 315 AKGREVVGRTGSSITRLAADIQQAAEVIHQLENHSQEISRVLDVIHGIAEQTNLLALNAA 374

Query: 386 IEAARAGEQGRGFAVVADEVRHLASRTTEATGNIENIIAGFQRDSQASLSSVDTVCSHAH 445
           IEAARAGEQGRGFAVVADEVR LASRT+ AT +I+ +I   Q  ++ ++  +      A 
Sbjct: 375 IEAARAGEQGRGFAVVADEVRQLASRTSLATTDIQRMIGSLQTGAREAVDVMQRSREQAE 434

Query: 446 QRSSEVEELSAAMTRVVSEMQQVLSHAMGIQEQTKRTTEVSHEIQNKVDVITHHANNTSQ 505
              S  ++   +++ + S + ++ + +  I     + + V  EI   +  I   ++    
Sbjct: 435 HSVSHADQAEHSLSGINSRVNEISAMSSQIAAAVDQQSSVGEEISQSIVSIRGSSDEHVA 494

Query: 506 SASETREISIDLEHLSQQLESLLNQF 531
           S   ++  +  +  L+  +  L+ QF
Sbjct: 495 SGLHSQRNATGVALLADGMLELVQQF 520