Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 528 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  154 bits (390), Expect = 6e-42
 Identities = 103/305 (33%), Positives = 157/305 (51%), Gaps = 21/305 (6%)

Query: 233 RKDELGQLAVSINSLMDTVSDSLQQVQDTSHSLADSAKKLTNVAQVTDQAANNQQKETAE 292
           R+DE GQ+A ++  L       + ++ D S  L+  A +L      + Q+A+ QQ ET +
Sbjct: 224 RRDEYGQIAFAMKMLETEAGAMVGRIGDASRQLSQHAHELLGAMDSSTQSASRQQSETDQ 283

Query: 293 VQTNITDMQGKQQQVEFATEEASKLVNHTTSIVQQSAKQAHAASEDIKNLVGDIEAVKQR 352
           V T I  M    Q+V    +  ++  +   S      +  +     I  L  DI+     
Sbjct: 284 VATAINQMAASVQEVANNAQRTAEAASRADSETATGTEVVNRTGAAIGQLAQDIQQAGDV 343

Query: 353 IVELNNQTGQVSSILGVIKGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRHLASRT 412
           I EL   +  ++ +L VI+GIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR+LASRT
Sbjct: 344 IHELEAHSNDITKVLDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLASRT 403

Query: 413 TEATGNIENIIAG-----------FQRDSQASLSSVDTVCSHAHQRSSEVEELSAAMTRV 461
            ++T  I  +I              QR  + ++ SV+    HA Q +  +  +++ +T +
Sbjct: 404 QQSTQEINGMIGALQGGARQAVEVMQRSREQAMQSVE----HAAQAARSLHGINSRVTEI 459

Query: 462 VSEMQQVLSHAMGIQEQTKRTTEVSHEIQNKVDVITHHANN---TSQSASETREISIDLE 518
               QQ+   A  +++Q+  +  ++  I +      HH  N   + QSAS   E++  +E
Sbjct: 460 SEMSQQI---AAAVEQQSAVSENINQNIVSIRGGSDHHVANGLRSRQSASGVAELANSME 516

Query: 519 HLSQQ 523
            L QQ
Sbjct: 517 VLVQQ 521



 Score = 37.4 bits (85), Expect = 1e-06
 Identities = 36/187 (19%), Positives = 81/187 (43%), Gaps = 22/187 (11%)

Query: 367 LGVIKGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRHLASRTTEATGNIENIIAGF 426
           L  ++ +AEQ   +  N   +   AG +   +  +A  ++ L +      G I +     
Sbjct: 198 LAPLQQLAEQARQVGDNPVGQLIYAGRRDE-YGQIAFAMKMLETEAGAMVGRIGDASRQL 256

Query: 427 QRDSQASLSSVDTVCSHAHQRSSEVEELSAAMTRVVSEMQQVLSHAMGIQEQTKRTTEVS 486
            + +   L ++D+    A ++ SE ++++ A+ ++ + +Q+V ++A       +RT E +
Sbjct: 257 SQHAHELLGAMDSSTQSASRQQSETDQVATAINQMAASVQEVANNA-------QRTAEAA 309

Query: 487 HEIQNKVDVITHHANNT-------SQSASETREISIDLEHLSQQLESLLN-------QFT 532
               ++    T   N T       +Q   +  ++  +LE  S  +  +L+       Q  
Sbjct: 310 SRADSETATGTEVVNRTGAAIGQLAQDIQQAGDVIHELEAHSNDITKVLDVIRGIAEQTN 369

Query: 533 LIAKNSA 539
           L+A N+A
Sbjct: 370 LLALNAA 376