Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 676 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  158 bits (400), Expect = 5e-43
 Identities = 112/408 (27%), Positives = 193/408 (47%), Gaps = 4/408 (0%)

Query: 128 KGIVVALPMKSSENYRGTNCVACHIAPEGEVLGVIRLEFNLNHLTQMVNHRTLIGVGIMS 187
           KG   ++    + + RG   V+     + E+   ++ E N  +   ++    +I + ++ 
Sbjct: 273 KGTEFSVQQGQALSARGNVVVSGLYKAQDEIQTALQNELNTRYDALVLQREVVIAMCVIM 332

Query: 188 VIALFGFMLTLFFMRRIIVLPLQKTSAFMCEVSKSKDLSHRLENDRKDELGQLAVSINSL 247
            + L     +++   R+ +  L   +  + E     DLS R+    KDE+  +A  +N +
Sbjct: 333 GLLLLYAFCSIYRALRLTIDSLLGVTRRLGE----GDLSARVAVVSKDEVADIANGLNLM 388

Query: 248 MDTVSDSLQQVQDTSHSLADSAKKLTNVAQVTDQAANNQQKETAEVQTNITDMQGKQQQV 307
            D  + S+  +  TS+ L D A +L     +  Q+ N QQ ET +V T I +M      V
Sbjct: 389 ADAFASSISHMDRTSYELTDVASRLGASIGLAKQSMNAQQAETEQVATAINEMTASVADV 448

Query: 308 EFATEEASKLVNHTTSIVQQSAKQAHAASEDIKNLVGDIEAVKQRIVELNNQTGQVSSIL 367
              TE A+   +   +  +   +  H A   I+ L  ++E   Q++  L   +  +  ++
Sbjct: 449 AQNTEGAALAADEANTASRNGLRIMHQAHSTIQALAEEVELSAQKVQALALHSQSIGGVI 508

Query: 368 GVIKGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRHLASRTTEATGNIENIIAGFQ 427
            VI  IA+QTNLLALNAAIEAARAGEQGRGFAVVADEVR LASRT  +T  I  II   Q
Sbjct: 509 QVISTIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQASTEEIRGIIQQLQ 568

Query: 428 RDSQASLSSVDTVCSHAHQRSSEVEELSAAMTRVVSEMQQVLSHAMGIQEQTKRTTEVSH 487
             + A++  +      AH   S   + S +++ +   +++++     I     +   VS 
Sbjct: 569 SATDAAVQQMQAGQQKAHACISAASDASGSLSSISQGVERIVEMNTQIASAAVQQHAVSE 628

Query: 488 EIQNKVDVITHHANNTSQSASETREISIDLEHLSQQLESLLNQFTLIA 535
           +I   V  I + +             + +L  ++  + +++ +F LIA
Sbjct: 629 DINRNVMEIRNSSGTLMLGIDNNAVTADELARVASDMRNVVARFKLIA 676