Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 640 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  169 bits (429), Expect = 2e-46
 Identities = 110/362 (30%), Positives = 189/362 (52%), Gaps = 16/362 (4%)

Query: 177 HRTLIGVGIMSVIALFGFMLTLFFMRRIIVLPLQKTSAFMCEVSKSKDLSHRLENDRKDE 236
           H   + +G + ++ L G +  +   R+I   PL+ T A +  ++ S DL+H     R+DE
Sbjct: 286 HARSLQIGCVVLVMLLGILAAVIITRQI-TRPLRDTLAIVERIA-SGDLTHTEAVTRRDE 343

Query: 237 LGQLAVSINSLMDTVSDSLQQVQDTSHSLADSAKKLTNVAQVTDQAANNQQKETAEVQTN 296
           LG L   I  +  T+ + +  ++D    +A +A++L+ V + T    N+Q+ ET +V T 
Sbjct: 344 LGVLQQGIQRMGTTLRELISGIRDGVTQIASAAEELSAVTEQTSAGVNSQKVETDQVATA 403

Query: 297 ITDMQGKQQQVEFATEEASKLVNHTTSIVQQSAKQAHAASEDIKNLVGDIEAVKQRIVEL 356
           + +M     +V    E+AS   +      +   K    A + I+ L  ++      +  L
Sbjct: 404 MHEMSATVHEVARNAEQASVAASDADQQARDGDKVVGEAIQQIERLAAEVVRSSDAMNVL 463

Query: 357 NNQTGQVSSILGVIKGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRHLASRTTEAT 416
              + ++  ++ VIK +AEQTNLLALNAAIEAARAGE GRGFAVVADEVR LA RT ++T
Sbjct: 464 EQDSDKIGKVMDVIKAVAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRGLAQRTQQST 523

Query: 417 GNIENIIAGFQRDSQ-------ASLSSVDTVCSHAHQRSSEVEELSAAMTRVVSEMQQVL 469
             IE ++A  Q  ++        S +  D+      +  + +E ++  ++ + +  QQ+ 
Sbjct: 524 EEIEGLVAALQNGTRQVSGIMLGSRTLTDSSVELTRRAGTSLESITRTVSSIQAMNQQI- 582

Query: 470 SHAMGIQEQTKRTTEVSHEIQNKVDVITHHANNTSQSASETREISIDLEHLSQQLESLLN 529
             A   ++Q+    E+S  I N  DV    +  T++++ ET   S++L  L  QL+ +++
Sbjct: 583 --AAAAEQQSSVADEISRSIVNVRDV----SEQTAEASEETAASSVELARLGGQLQMMVS 636

Query: 530 QF 531
            F
Sbjct: 637 HF 638