Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 642 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  157 bits (397), Expect = 1e-42
 Identities = 110/360 (30%), Positives = 181/360 (50%), Gaps = 30/360 (8%)

Query: 188 VIALFGFMLTLFFMRRIIVLPLQKTSAFMCEVSKSKDLSHRLENDRKDELGQL------- 240
           ++ L G    +   R+I   PL  T      ++   DL++ L   R+DELG L       
Sbjct: 299 IVLLLGIFAAILITRQI-TRPLDSTVIAARRIADG-DLTNDLSTTRQDELGLLQNTMQHM 356

Query: 241 AVSINSLMDTVSDSLQQVQDTSHSLADSAKKLTNVAQVTDQAANNQQKETAEVQTNITDM 300
            VS+ +L+  +S+ + Q+       A +A++L+ V++ T      Q+ E  +V T +  M
Sbjct: 357 TVSLRTLIGGISNGVTQI-------ATAAEELSAVSEQTSAGVTQQKLEVDQVATAMNQM 409

Query: 301 QGKQQQVEFATEEASKLVNHTTSIVQQSAKQAHAASEDIKNLVGDIEAVKQRIVELNNQT 360
               Q+V   TE+AS+     +      +     A+ +I  L G++  + + +  L   +
Sbjct: 410 ASTVQEVAQNTEDASQAARQASDRAAHGSSVVQHATREISQLAGEVGQLGEAMQRLIQDS 469

Query: 361 GQVSSILGVIKGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRHLASRTTEATGNIE 420
            ++  ++ VIK +AEQTNLLALNAAIEAARAGEQGRGFAVVADEVR LA RT  +T  IE
Sbjct: 470 DKIGGVIDVIKAVAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAQRTQSSTTEIE 529

Query: 421 NIIAGFQRDS-------QASLSSVDTVCSHAHQRSSEVEELSAAMTRVVSEMQQVLSHAM 473
            +I   Q  +        AS    +   + A Q    + E++ ++  +    QQ+ + A 
Sbjct: 530 ALIKSLQDGTGAASELMNASRQRTEGTVALARQAEESLLEITHSIVTIEQMSQQISAAA- 588

Query: 474 GIQEQTKRTTEVSHEIQNKVDVITHHANNTSQSASETREISIDLEHLSQQLESLLNQFTL 533
             +EQ+  T E++  + +  D+    A  T QSA+ T    ++L  L   L+ ++ +F +
Sbjct: 589 --EEQSAVTDEINRSVISVRDIADQSATATEQSAAST----VELARLGSNLQDMVARFRI 642



 Score = 37.7 bits (86), Expect = 1e-06
 Identities = 71/390 (18%), Positives = 151/390 (38%), Gaps = 89/390 (22%)

Query: 234 KDELGQLAVSINSLMDT---VSDSLQQVQDTSHSLADS-----AKKLTNVAQVTDQAANN 285
           +D+ G L  + + L+D    +  ++Q +   S  ++ S      K   +V++  DQ+  +
Sbjct: 110 RDQAGVLKQTFSQLVDNNRQIDQAMQPLITISEQVSGSFETLLQKTFDDVSRSLDQSGID 169

Query: 286 QQKETAEVQTNITDMQ-----------GKQQQVEFATEEASKLVNHTTSIVQQ------- 327
           Q K   +++  +T+ +            + +Q+ F  + A  L+    S   Q       
Sbjct: 170 QVKIAGDLRNGMTNFRLVFRRYISIPTAENRQITF--DAADSLIAQVGSARNQLPNKAGP 227

Query: 328 SAKQAHAASEDIKNLVGDIEAVKQRIVELNNQTGQ-----VSSILGVIKGIAEQTN---- 378
           +  +A AA +  K+L+  I  + Q+  ++ +   Q     V+S   ++ G     N    
Sbjct: 228 AVDEALAALQQYKSLMVSISQLMQQNDQIRDSLRQQSMDIVTSAEKLMAGQVVSANKEKD 287

Query: 379 --------------LLALNAAIEAARAGEQGRGFAVVA------------------DEVR 406
                         LL + AAI   R   +     V+A                  DE+ 
Sbjct: 288 SAVTQLLTVAVIVLLLGIFAAILITRQITRPLDSTVIAARRIADGDLTNDLSTTRQDELG 347

Query: 407 HLASRTTEATGNIENIIAGFQRDSQASLSSVDTVCSHAHQRSS-------EVEELSAAMT 459
            L +     T ++  +I G         ++ + + + + Q S+       EV++++ AM 
Sbjct: 348 LLQNTMQHMTVSLRTLIGGISNGVTQIATAAEELSAVSEQTSAGVTQQKLEVDQVATAMN 407

Query: 460 RVVSEMQQVLSHAMGIQEQTKRTTEVSHEIQNKVDVITHHANNTSQSASETREISIDLEH 519
           ++ S +Q+V   A   ++ ++   + S    +   V+ H     SQ A E  ++   ++ 
Sbjct: 408 QMASTVQEV---AQNTEDASQAARQASDRAAHGSSVVQHATREISQLAGEVGQLGEAMQR 464

Query: 520 LSQQ----------LESLLNQFTLIAKNSA 539
           L Q           ++++  Q  L+A N+A
Sbjct: 465 LIQDSDKIGGVIDVIKAVAEQTNLLALNAA 494