Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 619 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  165 bits (417), Expect = 5e-45
 Identities = 112/353 (31%), Positives = 182/353 (51%), Gaps = 9/353 (2%)

Query: 183 VGIMSVIALFGFMLTLFFMRRIIVLPLQKTSAFMCEVSKSKDLSHRLENDRKDELGQLAV 242
           + +  + AL    L  + +  +IV PL+ T      V+   DL+H     RKDELGQL  
Sbjct: 270 LSVWLIAALIMSALAAWVITNLIVGPLRDTLKLAERVADG-DLTHNQVVTRKDELGQLQG 328

Query: 243 SINSLMDTVSDSLQQVQDTSHSLADSAKKLTNVAQVTDQAANNQQKETAEVQTNITDMQG 302
           S+  +   + + +  ++D    +A +A++L+ V + T    N+Q+ ET +V T + +M  
Sbjct: 329 SMMRMTGNLRELIGGLRDGVTQIASAAEQLSAVTEQTSAGVNSQKNETDQVATAMHEMSA 388

Query: 303 KQQQVEFATEEASKLVNHTTSIVQQSAKQAHAASEDIKNLVGDIEAVKQRIVELNNQTGQ 362
             Q+V    E+AS    + +   ++       A   I+ L  ++   K  + +L N++ +
Sbjct: 389 TVQEVARNAEQASHAAVNASKEAREGDGVVSKAVAQIEKLATEVTHSKSAMDDLKNESNK 448

Query: 363 VSSILGVIKGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRHLASRTTEATGNIENI 422
           +  +L VIK +AEQTNLLALNAAIEAARAGE GRGFAVVADEVR LA RT  +T  I  +
Sbjct: 449 IGGVLDVIKAVAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRSLAQRTQTSTEEIAAL 508

Query: 423 IAGFQRDSQASLSSVDTVCSHAHQRSSEVEELSAAMTRVVSEMQQVLSHAMGIQEQTKRT 482
           I+G         + V T+  ++   ++   EL+      ++ M Q +S    +  Q    
Sbjct: 509 ISGL----HTRTAQVATILDNSQALTANSVELTRNAGVSINNMTQAISTIETMNHQIAAA 564

Query: 483 TE----VSHEIQNKVDVITHHANNTSQSASETREISIDLEHLSQQLESLLNQF 531
            E    V+ EI   V  +   +  T+ ++ ET   S++L  L   L+SL+++F
Sbjct: 565 AEEQSAVAEEINRSVLNVRDISEQTASASEETAASSVELARLGVHLQSLVSRF 617