Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 681 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  168 bits (426), Expect = 5e-46
 Identities = 108/355 (30%), Positives = 187/355 (52%), Gaps = 15/355 (4%)

Query: 186 MSVIALFGFMLTLFFMRRIIVLPLQKTSAFMCEVSKSKDLSHRLENDRKDELGQLAVSIN 245
           ++++ L   +   F + R I +PL  T      ++   DL+H     R+DELG L  ++ 
Sbjct: 335 VALVVLLVGIFAAFLITRQITVPLNSTVIAARRIADG-DLTHDSSTTRQDELGLLQNTMQ 393

Query: 246 SLMDTVSDSLQQVQDTSHSLADSAKKLTNVAQVTDQAANNQQKETAEVQTNITDMQGKQQ 305
            +  ++   +  + +    +A +A++L+ V++ T      Q+ E  +V T + +M    Q
Sbjct: 394 HMTVSLRGLIGGIGNGVTQIATAAEQLSAVSEQTSAGVTLQKNEVDQVATAMNEMASTVQ 453

Query: 306 QVEFATEEASKLVNHTTSIVQQSAKQAHAASEDIKNLVGDIEAVKQRIVELNNQTGQVSS 365
           +V   TE+AS+     +      +     A+ +I  L G+++ + + +  L   +G++ S
Sbjct: 454 EVARNTEDASQAAKQASERAAHGSSVVQHATREIGQLAGEVQQLGEAMQRLTEDSGKIGS 513

Query: 366 ILGVIKGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRHLASRTTEATGNIENIIAG 425
           ++ VIK +AEQTNLLALNAAIEAARAGEQGRGFAVVADEVR LA RT  +T  IE +I  
Sbjct: 514 VIDVIKAVAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAQRTQNSTTEIEALIQA 573

Query: 426 FQRDS-------QASLSSVDTVCSHAHQRSSEVEELSAAMTRVVSEMQQVLSHAMGIQEQ 478
            Q+ +        ASL   +     A Q    + E++ ++  +    QQ+ + A   ++Q
Sbjct: 574 LQKGTGAASGLMDASLQRTEGTVVLARQAEQALVEINQSIGTIEQMSQQISAAA---EQQ 630

Query: 479 TKRTTEVSHEIQNKVDVITHHANNTSQSASETREISIDLEHLSQQLESLLNQFTL 533
           +  T E++  + +  D+    A+ T QSA+ T    ++L  L   L+S++ +F +
Sbjct: 631 SAVTEEINRSVLSVRDIADQSASATEQSAAST----VELARLGSDLQSMVARFKI 681



 Score = 36.2 bits (82), Expect = 4e-06
 Identities = 50/274 (18%), Positives = 107/274 (39%), Gaps = 38/274 (13%)

Query: 288 KETAEVQTNITDMQGKQQQVEFATEEASKLVNHTTSIVQQSAKQAHAASEDIKNLVGDIE 347
           K+   + T+I+DM  + +Q+                + QQS   A  A +     V   +
Sbjct: 276 KQYKVLMTSISDMLQQTEQIR-------------NDLQQQSVATAARADDLAALQVISAK 322

Query: 348 AVKQRIVELNNQTGQVSSILGVIKGIAEQTNL-LALNAAIEAARAGEQGR----GFAVVA 402
             +Q  V        V  ++G+         + + LN+ + AAR    G           
Sbjct: 323 KEQQTAVVQLLSVALVVLLVGIFAAFLITRQITVPLNSTVIAARRIADGDLTHDSSTTRQ 382

Query: 403 DEVRHLASRTTEATGNIENIIAGFQRDSQASLSSVDTVCSHAHQRSS-------EVEELS 455
           DE+  L +     T ++  +I G         ++ + + + + Q S+       EV++++
Sbjct: 383 DELGLLQNTMQHMTVSLRGLIGGIGNGVTQIATAAEQLSAVSEQTSAGVTLQKNEVDQVA 442

Query: 456 AAMTRVVSEMQQVLSHAMGIQEQTKRTTEVSHEIQNKVDVITHHANNTSQSASETREISI 515
            AM  + S +Q+V   A   ++ ++   + S    +   V+ H      Q A E +++  
Sbjct: 443 TAMNEMASTVQEV---ARNTEDASQAAKQASERAAHGSSVVQHATREIGQLAGEVQQLGE 499

Query: 516 DLEHLSQQ----------LESLLNQFTLIAKNSA 539
            ++ L++           ++++  Q  L+A N+A
Sbjct: 500 AMQRLTEDSGKIGSVIDVIKAVAEQTNLLALNAA 533