Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 638 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  177 bits (448), Expect = 1e-48
 Identities = 123/355 (34%), Positives = 193/355 (54%), Gaps = 17/355 (4%)

Query: 187 SVIALFGFMLTLFFMRRIIVLPLQKTSAFMCEVSKSKDLSHRLENDRKDELGQLAVSINS 246
           + +A+   +L  + + R I  PLQ+T   +  V+ S DLS  L  DRKDELG+L  +I  
Sbjct: 293 TALAMVLGILAAWVITRQITTPLQETLEVVERVA-SGDLSRNLNVDRKDELGKLQATIQR 351

Query: 247 LMDTVSDSLQQVQDTSHSLADSAKKLTNVAQVTDQAANNQQKETAEVQTNITDMQGKQQQ 306
           +  ++ + +  ++D    +A +A++L+ V + T    N+Q+ ET +V T + +M    Q+
Sbjct: 352 MTVSLRELVGGIRDGVTQIASAAEELSAVTEQTSAGVNSQKVETDQVATAMHEMTATVQE 411

Query: 307 VEFATEEASKLVNHTTSIVQQSAKQAHAASEDIKNLVGDIEAVKQRIVELNNQTGQVSSI 366
           V    EEAS+         +   +  + A   I+ L   +    + +  L  ++ ++ S+
Sbjct: 412 VARNAEEASEAAVAADRQARDGERVVNEAIAQIERLASAVGNSSEAMGALKQESDKIGSV 471

Query: 367 LGVIKGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRHLASRTTEATGNIENIIAGF 426
           L VIK +AEQTNLLALNAAIEAARAGE GRGFAVVADEVR LA RT ++T  IE +IA  
Sbjct: 472 LDVIKSVAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRSLAQRTQKSTEEIEALIARL 531

Query: 427 QRDSQASLSSVDTVCSHAHQRSSEVEELS-------AAMTRVVSEMQQVLSH-AMGIQEQ 478
           Q  +Q       TV   + + S+   EL+       A +T+ VS +Q +    A   +EQ
Sbjct: 532 QSGTQ----QATTVMDSSRELSTSSVELTRRAGGSLANITKTVSSIQAMNQQIAAAAEEQ 587

Query: 479 TKRTTEVSHEIQNKVDVITHHANNTSQSASETREISIDLEHLSQQLESLLNQFTL 533
           +    E++  I N  DV    +  TS ++ ET   S++L  L   L+ L+++FT+
Sbjct: 588 SATAEEINRSIINVRDV----SEQTSAASEETAASSVELARLGNHLQVLVSRFTV 638



 Score = 33.9 bits (76), Expect = 2e-05
 Identities = 46/229 (20%), Positives = 98/229 (42%), Gaps = 26/229 (11%)

Query: 334 AASEDI---KNLVGDIEAVKQRIVELNNQTGQVSSILGVIKG--IAEQ--TNLLALNAAI 386
           A S D+   +N   D ++ K   V++      ++ +LG++    I  Q  T L      +
Sbjct: 265 ATSNDLITRQNKSRDADSAKS--VQMIIAATALAMVLGILAAWVITRQITTPLQETLEVV 322

Query: 387 EAARAGEQGRGFAVVA-DEVRHLASRTTEATGNIENIIAGFQRDSQASLSSVDTVCSHAH 445
           E   +G+  R   V   DE+  L +     T ++  ++ G  RD    ++S     S   
Sbjct: 323 ERVASGDLSRNLNVDRKDELGKLQATIQRMTVSLRELVGGI-RDGVTQIASAAEELSAVT 381

Query: 446 QRSS--------EVEELSAAMTRVVSEMQQVLSHAMGIQE-------QTKRTTEVSHEIQ 490
           +++S        E ++++ AM  + + +Q+V  +A    E       Q +    V +E  
Sbjct: 382 EQTSAGVNSQKVETDQVATAMHEMTATVQEVARNAEEASEAAVAADRQARDGERVVNEAI 441

Query: 491 NKVDVITHHANNTSQSASETREISIDLEHLSQQLESLLNQFTLIAKNSA 539
            +++ +     N+S++    ++ S  +  +   ++S+  Q  L+A N+A
Sbjct: 442 AQIERLASAVGNSSEAMGALKQESDKIGSVLDVIKSVAEQTNLLALNAA 490