Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 558 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  166 bits (421), Expect = 2e-45
 Identities = 109/353 (30%), Positives = 182/353 (51%), Gaps = 3/353 (0%)

Query: 181 IGVGIMSVIALFGFMLTLFFMRRIIVLPLQKTSAFMCEVSKSK-DLSHRLENDRKDELGQ 239
           + + +MS++  F  ++ ++     +V P++     + +++K + DL+ RL    +DE+ +
Sbjct: 205 VAIFMMSLVLAFITLIAIWSAAHRMVKPIRAMVDSLNDIAKGEGDLTARLSVRGEDEIAE 264

Query: 240 LAVSINSLMDTVSDSLQQVQDTSHSLADSAKKLTNVAQVTDQAANNQQKETAEVQTNITD 299
           L ++ N  +D +   ++ V DT+  +  +A  +           N+   ET +V T IT+
Sbjct: 265 LGIAFNQFVDKLQGIIRDVADTTGRVKQAAVDIDRQTSEMANQLNSHNNETDQVVTAITE 324

Query: 300 MQGKQQQVEFATEEASKLVNHTTSIVQQSAKQAHAASEDIKNLVGDIEAVKQRIVELNNQ 359
           M     +V   T + ++     T  V ++      +  +I NL+  +      I  L+ Q
Sbjct: 325 MSSTAAEVAQNTTQVAEATQAATGDVAKAQACVDTSLAEISNLMSQVNDAAANIQSLSEQ 384

Query: 360 TGQVSSILGVIKGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRHLASRTTEATGNI 419
           + +++S+L VI GIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR+LASRT  +T  I
Sbjct: 385 SQKINSVLSVIGGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLASRTQASTLEI 444

Query: 420 ENIIAGFQRDSQASLSSVDTVCSHAHQRSSEVE-ELSAAMTRVVSEMQQVLSHAMGIQEQ 478
             ++    R   +++ ++D    H+ QRS E    +S ++  V S +  +   +  I   
Sbjct: 445 NEMLTDLHRLVSSAVKTMDE-SQHSCQRSVEASTAISESLGSVTSAVTAINDMSTQIAAA 503

Query: 479 TKRTTEVSHEIQNKVDVITHHANNTSQSASETREISIDLEHLSQQLESLLNQF 531
               + V+ EI   V  I    N    S+ E R +S  +     QL +L+ QF
Sbjct: 504 ATEQSSVTEEINRNVYAIQEIVNALLVSSQEARTVSRTVSTEGAQLSNLVGQF 556