Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 621 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  174 bits (442), Expect = 7e-48
 Identities = 107/347 (30%), Positives = 180/347 (51%), Gaps = 1/347 (0%)

Query: 185 IMSVIALFGFMLTLFFMRRIIVLPLQKTSAFMCEVSKSKDLSHRLENDRKDELGQLAVSI 244
           + +VIA+   ++T F + R I+ P+   +  +  V K K+L+ R +    DE+ ++    
Sbjct: 273 LFAVIAVLVAIVT-FMIIRAIITPINNINQVISHVGKDKNLTLRCDTQGGDEIAEIGQHF 331

Query: 245 NSLMDTVSDSLQQVQDTSHSLADSAKKLTNVAQVTDQAANNQQKETAEVQTNITDMQGKQ 304
           N ++++    +QQV D  + + +S ++L+  A         Q  ET  V T IT+M    
Sbjct: 332 NEMVESFRALIQQVNDAVNVMNESCQELSANATQASDGVLRQLNETDMVATAITEMGATI 391

Query: 305 QQVEFATEEASKLVNHTTSIVQQSAKQAHAASEDIKNLVGDIEAVKQRIVELNNQTGQVS 364
            ++   TE A++  NHT +  Q   +      E I++L   +      + EL   +G + 
Sbjct: 392 DEIAKNTELAAERANHTHTNAQVGQQSVEQTIEKIQSLAQQLNNSASVVAELERDSGTIG 451

Query: 365 SILGVIKGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRHLASRTTEATGNIENIIA 424
           S+L VI+GIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR LA RT E+T  I  II 
Sbjct: 452 SVLDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAMRTQESTEEIAGIIQ 511

Query: 425 GFQRDSQASLSSVDTVCSHAHQRSSEVEELSAAMTRVVSEMQQVLSHAMGIQEQTKRTTE 484
             Q  +++ +  ++       + + +       + ++  ++  ++  +  I    +  + 
Sbjct: 512 TLQSRTRSIVQLMEASQRQGGESAEQAASAGTMLAQINQDVTNIMDMSTQIAAAIEEQSS 571

Query: 485 VSHEIQNKVDVITHHANNTSQSASETREISIDLEHLSQQLESLLNQF 531
           V+ E+   V VI   A  +S +A    + S D+   ++ L+  ++QF
Sbjct: 572 VAAEVNKNVVVIRDIAEESSHAAMANAKASDDVRERAEYLQRAVSQF 618



 Score = 37.0 bits (84), Expect = 2e-06
 Identities = 58/326 (17%), Positives = 124/326 (38%), Gaps = 28/326 (8%)

Query: 223 KDLSHRLENDRKDELGQLAVSINSLMDTVSDSLQQVQDTSHSLADSAKKLTNVAQVTDQA 282
           KD   R +    D+  Q   S +S +D          D S  +AD  ++L    Q+  +A
Sbjct: 166 KDFMLRRDAGYLDKFQQTLRSFDSTLDG--------SDLSPDVADEIRRLMKDYQMNFEA 217

Query: 283 ANNQQKE--TAEVQTNITDMQGKQQQVEFATEEASKLVNHTTSIVQQSAKQAHAASEDIK 340
             N++KE    +    +  ++    Q E AT+E  +L  H    +      + A +  + 
Sbjct: 218 LVNKEKEFGLGKEDGKMGALRSVIDQSEQATQELRELALHE---IHDEEGDSVAMATTLF 274

Query: 341 NLVGDIEAVKQRIVELNNQTGQVSSILGVIKGIAEQTNLLALNAAIEAARAGEQGRGFAV 400
            ++  + A+   ++ +      +++I  VI  + +  NL             E G+ F  
Sbjct: 275 AVIAVLVAIVTFMI-IRAIITPINNINQVISHVGKDKNLTLRCDTQGGDEIAEIGQHFNE 333

Query: 401 VADEVRHLASRTTEATG----NIENIIAGFQRDSQA---SLSSVDTVCSHAHQRSSEVEE 453
           + +  R L  +  +A      + + + A   + S      L+  D V +   +  + ++E
Sbjct: 334 MVESFRALIQQVNDAVNVMNESCQELSANATQASDGVLRQLNETDMVATAITEMGATIDE 393

Query: 454 LSAAMTRVVSEMQQVLSHAMGIQEQTKRTTEVSHEIQNKVDVITHHANNTSQSASETREI 513
           ++              ++A   Q+  ++T E       K+  +    NN++   +E    
Sbjct: 394 IAKNTELAAERANHTHTNAQVGQQSVEQTIE-------KIQSLAQQLNNSASVVAELERD 446

Query: 514 SIDLEHLSQQLESLLNQFTLIAKNSA 539
           S  +  +   +  +  Q  L+A N+A
Sbjct: 447 SGTIGSVLDVIRGIAEQTNLLALNAA 472