Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 495 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  162 bits (410), Expect = 3e-44
 Identities = 106/352 (30%), Positives = 193/352 (54%), Gaps = 9/352 (2%)

Query: 187 SVIALFGFMLTLFFMRRIIVLPLQKTSAFMCEVSKSK-DLSHRLENDRKDELGQLAVSIN 245
           ++I L   ++ +  ++++++ PL    + M +V+    DL+ RL  + +DE+G+LA + N
Sbjct: 148 ALILLLSMVVIVIILKKLVITPLAHVVSAMEDVASGDGDLTRRLPVESQDEIGRLASAFN 207

Query: 246 SLMDTVSDSLQQVQDTSHSLADSAKKLTNVAQVTDQAANNQQKETAEVQTNITDMQGKQQ 305
           + ++ +  ++ +VQ+T+  L + A  L +++   +     Q++ET    T ++ +     
Sbjct: 208 AFIEQIHATVTKVQETAAQLIEGAGTLGSLSGANNLRVQEQRQETEAAVTAVSQLSASAA 267

Query: 306 QVEFATEEASKLVNHTTSIVQQSAKQAHAASEDIKNLVGDIEAVKQRIVELNNQTGQVSS 365
           +V       S+      + V +S ++   +    + LV ++      + +L  +T ++  
Sbjct: 268 EVAGNALRTSEAAAEADAQVDESQRRFDQSLGLTRQLVDELSRCAISVQQLQQETQKIDE 327

Query: 366 ILGVIKGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRHLASRTTEATGNIENIIAG 425
           ++ VI  IAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR LASRT +ATG I+ +I  
Sbjct: 328 VVVVINSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQQATGEIQKMIQQ 387

Query: 426 FQ---RDSQASLSSVDTVCSHAHQRSSEVEELSAAMTRVVSEMQQVLSH-AMGIQEQTKR 481
            Q    D+   + +   +   +  ++ E++ + A++TR+VS +  + +  A    EQT  
Sbjct: 388 VQTRVNDTVTVMGASQQLSDKSLSQAEEIKSMLASVTRLVSNINAMNTEVAHAASEQTSV 447

Query: 482 TTEVSHEIQNKVDVITHHANNTSQSASETREISIDLEHLSQQLESLLNQFTL 533
           T  +S  + N +  I+  A+  S S +++ E    L    ++L +L+N F L
Sbjct: 448 TENISRSL-NDLAGISGSASADSASLAQSGE---RLFQQGERLRALVNSFRL 495