Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 546 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  155 bits (392), Expect = 4e-42
 Identities = 97/357 (27%), Positives = 192/357 (53%), Gaps = 12/357 (3%)

Query: 180 LIGVGIMSVIALFGFMLTLFFMRRIIVLPLQKTSAFMCEVSKSK-DLSHRLENDRKDELG 238
           L G+ I+ ++A    ++++ +  R++   +++    +  +S  + DL  RL++  +DEL 
Sbjct: 195 LFGIIILVILAS---IVSVVYGPRLVTSRVEQLDTMIAAISDGEGDLRGRLDDSGRDELS 251

Query: 239 QLAVSINSLMDTVSDSLQQVQDTSHSLADSAKKLTNVAQVTDQAANNQQKETAEVQTNIT 298
            LA + N LM  +   +  ++  + SL      L + A+ +++ +  Q     ++ T + 
Sbjct: 252 LLARTFNGLMMKLQQLIGTIKSDAVSLDARVTGLNHSAKESEKISTEQNANLEQIATAVH 311

Query: 299 DMQGKQQQVEFATEEASKLVNHTTSIVQQSAKQAHAASEDIKNLVGDIEAVKQRIVELNN 358
            +     +V  +++ A     H  +++++S      + E ++ L G +    + I  L +
Sbjct: 312 QLSHAVHEVASSSQNALSDTEHANNLIKESNAVVGQSVERVQQLAGVVSHASEVIQNLAS 371

Query: 359 QTGQVSSILGVIKGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRHLASRTTEATGN 418
           ++ Q+ ++L VI+GIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR LASRT ++T +
Sbjct: 372 ESKQIVTVLDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQQSTED 431

Query: 419 IENIIAGFQRDSQASLSSVDTVCSHAHQRSSEVEELSAAMTRVVSEMQQVLSHAMG---- 474
           I+ ++AG +     ++S++D+      ++   V + S ++T+ ++E+ + +S        
Sbjct: 432 IQRMVAGLESGVSEAVSAIDS----GTRQVDSVVDASGSITKALAEVDEAVSRTKDLIYL 487

Query: 475 IQEQTKRTTEVSHEIQNKVDVITHHANNTSQSASETREISIDLEHLSQQLESLLNQF 531
           I   T++ ++V  E+   +  +   +  +      TRE + ++  +   L   + +F
Sbjct: 488 IATATEQQSKVVDEVNQNISSLNLLSQESIGVVRRTREAADEIAQIGTGLSGNVGRF 544