Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 620 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  171 bits (434), Expect = 6e-47
 Identities = 111/353 (31%), Positives = 184/353 (52%), Gaps = 3/353 (0%)

Query: 181 IGVGIMSVIALFGFMLTLFFMRRIIVLPLQKTSAFMCEVSKSKDLSHRLENDRKDELGQL 240
           I V I+  + L GF L +    R I+ P+Q+ S  +  +  +KDL+ R +    DE+GQ+
Sbjct: 271 IVVFILITLVLIGFTLAII---RSIMEPVQRISDAISRIEATKDLTLRCDTKVDDEIGQI 327

Query: 241 AVSINSLMDTVSDSLQQVQDTSHSLADSAKKLTNVAQVTDQAANNQQKETAEVQTNITDM 300
           A   NS++++    +++V  +   +  S ++L+  +    +    Q  ET  V T IT+M
Sbjct: 328 ARHFNSMVESFQSLIREVLTSVEVVNHSCQELSENSMRASEGVGRQLNETDMVATAITEM 387

Query: 301 QGKQQQVEFATEEASKLVNHTTSIVQQSAKQAHAASEDIKNLVGDIEAVKQRIVELNNQT 360
                ++   TE A++   +T    QQ         E I+ L   +    Q + EL   +
Sbjct: 388 GATIDEIASNTELAAERAGNTHDNAQQGQVGVEHTIEKIQALAAQLTDSAQVVSELEKDS 447

Query: 361 GQVSSILGVIKGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRHLASRTTEATGNIE 420
             + S+L VI+GIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR LA RT E+T  I 
Sbjct: 448 ETIGSVLDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAMRTQESTEEIA 507

Query: 421 NIIAGFQRDSQASLSSVDTVCSHAHQRSSEVEELSAAMTRVVSEMQQVLSHAMGIQEQTK 480
            II   Q  +++ +  ++       + + +     A + ++ +++  ++  +  I    +
Sbjct: 508 GIIQTLQSRTRSIVQLMEATQRQGIESADQAASAGALLEQINADVTNIMDMSTQIAAAIE 567

Query: 481 RTTEVSHEIQNKVDVITHHANNTSQSASETREISIDLEHLSQQLESLLNQFTL 533
             + V+ E+   V VI   A  ++Q+A E  + S D++  +Q L   ++ F +
Sbjct: 568 EQSMVASEVNKNVVVIRDIAAESAQAADENAKASDDVKARTQVLYQAVSLFKI 620