Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 632 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  173 bits (438), Expect = 2e-47
 Identities = 108/355 (30%), Positives = 183/355 (51%), Gaps = 5/355 (1%)

Query: 180 LIGVGIMSVIALFGFMLTLFFMRRIIVLPLQKTSAFMCEVSKSK-DLSHRLENDRKDELG 238
           L+   IM + A+   +  L+ + R    P+    A + E+SK   DL+ RLE   +D+LG
Sbjct: 281 LVSSAIMLLCAISILLGVLYLLYR----PILSLKAMVTELSKGNGDLTKRLEIHCEDDLG 336

Query: 239 QLAVSINSLMDTVSDSLQQVQDTSHSLADSAKKLTNVAQVTDQAANNQQKETAEVQTNIT 298
           Q+++ IN  +  +   +++V   S  ++ S ++L    +      +   KET ++   + 
Sbjct: 337 QISMGINQFIANLQAMMREVLQASAHISGSVERLNGETETNRHILSAHTKETEQIVAAVE 396

Query: 299 DMQGKQQQVEFATEEASKLVNHTTSIVQQSAKQAHAASEDIKNLVGDIEAVKQRIVELNN 358
           +M      V     E +     T      S +    A+E +  LV ++E    +I +++ 
Sbjct: 397 EMSATANDVAQNGSETASFTQLTNEQALASKQVVAQATETVNRLVREVEHTADKIGQIDR 456

Query: 359 QTGQVSSILGVIKGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRHLASRTTEATGN 418
            T  ++ +L VI  IA+QTNLLALNAAIEAARAGEQGRGFAVVADEVR LA+RT ++T  
Sbjct: 457 DTINITQVLKVIGDIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAARTQDSTAE 516

Query: 419 IENIIAGFQRDSQASLSSVDTVCSHAHQRSSEVEELSAAMTRVVSEMQQVLSHAMGIQEQ 478
           IE  ++  +  S +++ S++       + +S  E ++  +  + S + Q+      I   
Sbjct: 517 IEETLSNLRDASNSAIHSMEVTKQTCLETASTTERVATDLDAIGSSVNQINDLNTQIATA 576

Query: 479 TKRTTEVSHEIQNKVDVITHHANNTSQSASETREISIDLEHLSQQLESLLNQFTL 533
            +  + VS EI   +  I   AN  ++S   +R  +++L   +QQLE ++ QF L
Sbjct: 577 AEEQSSVSAEITRNMSAICDMANELARSGESSRNETVNLATANQQLEQIVGQFKL 631