Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 638 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  167 bits (422), Expect = 1e-45
 Identities = 105/348 (30%), Positives = 178/348 (51%), Gaps = 1/348 (0%)

Query: 185 IMSVIALFGFMLTLFFMRRIIVLPLQKTSAFMCEVSKSK-DLSHRLENDRKDELGQLAVS 243
           + +V+    F+    F+   +  P+ K +  + ++ + + DL  RL  +  DEL QLA  
Sbjct: 289 VWTVLIAAAFIGLSTFVSASVSQPIAKVADMLQDIGQGEGDLRQRLPVEGNDELAQLAKG 348

Query: 244 INSLMDTVSDSLQQVQDTSHSLADSAKKLTNVAQVTDQAANNQQKETAEVQTNITDMQGK 303
            NS ++ +  S+ +V DTS  L+ +AK + N AQ T   +  Q+ +T  V T I +M   
Sbjct: 349 FNSFIEKIQHSIIEVTDTSVQLSHAAKDVANQAQQTQDDSQLQKDQTMMVVTAINEMGAT 408

Query: 304 QQQVEFATEEASKLVNHTTSIVQQSAKQAHAASEDIKNLVGDIEAVKQRIVELNNQTGQV 363
             ++     +A+       +           A + I  L  D+E V   I  L   T  +
Sbjct: 409 VHEIAGNAAQAADNAKDADNASSNGQIVVTRARDTINQLSQDVEQVGNVIESLATHTTSI 468

Query: 364 SSILGVIKGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRHLASRTTEATGNIENII 423
            SIL VI+ +++QTNLLALNAAIEAARAGE GRGFAVVA+EVR+LASRT  +T  ++ +I
Sbjct: 469 GSILDVIRAVSDQTNLLALNAAIEAARAGEAGRGFAVVAEEVRNLASRTAASTDEVQKMI 528

Query: 424 AGFQRDSQASLSSVDTVCSHAHQRSSEVEELSAAMTRVVSEMQQVLSHAMGIQEQTKRTT 483
              Q ++  ++ ++    S + +    V+E S  +T +  ++  +    + +   T+  +
Sbjct: 529 DNLQSEAARAVEAMTQSKSRSQEGVQAVDEASHTLTEISQQIGAITDMNIQVAAATEEQS 588

Query: 484 EVSHEIQNKVDVITHHANNTSQSASETREISIDLEHLSQQLESLLNQF 531
            V  +I   V  I+     TS+++    + S  L  L+ +L++L+  F
Sbjct: 589 TVVEDINRNVTEISEITQRTSETSQAVAQASQSLNQLAHRLDTLVAGF 636