Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 546 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  159 bits (402), Expect = 3e-43
 Identities = 113/357 (31%), Positives = 189/357 (52%), Gaps = 19/357 (5%)

Query: 185 IMSVIALFGFMLTLFFMRRIIVLPLQKTSAFMCEVSKSKDLSHRLENDR--KDELGQLAV 242
           I+    +F  ++  F + R I  P+        EVS   +L+++L  +   +DE GQLA 
Sbjct: 197 IVGFSTIFFVVVMAFLLIRQIQNPIMWLLKQTHEVSAG-NLTNKLNMNAFARDEFGQLAE 255

Query: 243 SINSLMDTVSDSLQQVQDTSHSLADSAKKLTNVAQVTDQAANNQQKETAEVQTNITDMQG 302
           S N + D +   + +V ++   L+ +A+++++VA  +      QQ E  ++ T + +MQ 
Sbjct: 256 SFNEMQDNLHMLVSEVSNSIVQLSSAAEEISSVALHSSNNMETQQNELNQLATAMHEMQA 315

Query: 303 KQQQVEFATEEASKLVNHTTSIVQQSAKQAHAASEDIKNLVGDIEAVKQRIVELNNQTGQ 362
             Q V   T +A+      +    Q ++  + +   I  + G IEA    I +L + +  
Sbjct: 316 TVQDVARNTNDAANAATQASDTATQGSETVNDSIVRIDKVAGAIEATAVVIRKLGDDSRN 375

Query: 363 VSSILGVIKGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRHLASRTTEATGNIENI 422
           +  +L VI+GIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR LA RT ++T +I +I
Sbjct: 376 IGMVLEVIQGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLAKRTQDSTSHINSI 435

Query: 423 IAGFQRDS--------QASLSSVDTVCSHAHQRSSEVEELSAAMTRVVSEMQQVLSHAMG 474
           I+  Q  +        Q+    ++TVC  A +    + ++S++++  +S+M       + 
Sbjct: 436 ISELQLRANEAEETMQQSQEMMIETVCK-AREAGESIAKISSSVS-CISQMN------IQ 487

Query: 475 IQEQTKRTTEVSHEIQNKVDVITHHANNTSQSASETREISIDLEHLSQQLESLLNQF 531
           I   T+    VS E+   V  I+  + + +  A +      DL HL+ QL+ ++ +F
Sbjct: 488 IATATEEQGAVSEELNRNVANISGASEDVATGAKQMAMACNDLSHLATQLQDMVKKF 544