Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 642 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  174 bits (441), Expect = 9e-48
 Identities = 109/348 (31%), Positives = 182/348 (52%), Gaps = 1/348 (0%)

Query: 185 IMSVIALFGFMLTLFFMRRIIVLPLQKTSAFMCEVSKSK-DLSHRLENDRKDELGQLAVS 243
           I ++I   GF++    +   +  P+ + +A   ++ + + DL  RL  + KDE+ QLA  
Sbjct: 293 IWTLIIAAGFIMLAIVVAGSVSRPIAQVAAMFRDIGEGEGDLRQRLPVNGKDEIAQLAQG 352

Query: 244 INSLMDTVSDSLQQVQDTSHSLADSAKKLTNVAQVTDQAANNQQKETAEVQTNITDMQGK 303
            NS +  + DS+ +V  TS  L  SAK ++N AQ T + ++ Q+  T  V T I +M   
Sbjct: 353 FNSFISKIQDSVIEVAQTSEQLGLSAKDVSNQAQQTLEDSHEQKDRTMMVVTAINEMGAT 412

Query: 304 QQQVEFATEEASKLVNHTTSIVQQSAKQAHAASEDIKNLVGDIEAVKQRIVELNNQTGQV 363
             ++     +A+       +           A + I  L  D+E V + I  L   T  +
Sbjct: 413 VNEIASNAAQAAVAAKDADTESNSGQVVVTRARDTINQLSHDVEQVGEVIESLATHTKSI 472

Query: 364 SSILGVIKGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRHLASRTTEATGNIENII 423
             IL VI+ I+EQTNLLALNAAIEAARAGE GRGFAVVADEVR+LASRT  +T  ++ +I
Sbjct: 473 GGILDVIRAISEQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLASRTAASTNEVQGMI 532

Query: 424 AGFQRDSQASLSSVDTVCSHAHQRSSEVEELSAAMTRVVSEMQQVLSHAMGIQEQTKRTT 483
              Q ++  ++S++    + +H+  + V+E S ++  +   +  +    + +   T+  +
Sbjct: 533 DKLQSEASRAVSAMAQSRARSHEGVTAVDEASQSLVGISKRIGLISDMNIQVAAATEEQS 592

Query: 484 EVSHEIQNKVDVITHHANNTSQSASETREISIDLEHLSQQLESLLNQF 531
            V  +I   V  I      T+ +A    + S+ L  L+ +L++L+ +F
Sbjct: 593 TVVEDINRNVTEINDITQRTASTAQAAAQASLALNQLAHRLDTLVAKF 640