Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 620 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  174 bits (441), Expect = 9e-48
 Identities = 124/418 (29%), Positives = 207/418 (49%), Gaps = 6/418 (1%)

Query: 118 IIEPYQADWGKGIVVALPMKSSENYRGT--NCVACHIAPEGEVLGVIRLEFNLNHLTQMV 175
           +I+ YQ D+ K +V        +  +GT    VA +   E     +  L   L  + +  
Sbjct: 207 LIDQYQKDF-KSLVSKEQQLGLDEKQGTMAQLVAANRLTESSADELHNLA--LKAIDETE 263

Query: 176 NHRTLIGVGIMSVIALFGFMLTLFFMRRIIVLPLQKTSAFMCEVSKSKDLSHRLENDRKD 235
           N    IG+ +  +IAL   ++T   +R II  P+++ +  +  +  SKDL+ R +   +D
Sbjct: 264 NSSRNIGITVFLIIALILGIITYLIIRSIIT-PVERITQVISRIEVSKDLTLRCDASTQD 322

Query: 236 ELGQLAVSINSLMDTVSDSLQQVQDTSHSLADSAKKLTNVAQVTDQAANNQQKETAEVQT 295
           ELG++A   NS++ +    ++QV ++  ++  S+K ++  A +  +    Q  ET  V T
Sbjct: 323 ELGEIAQHFNSMVGSFQQLIEQVIESVATINTSSKSVSQNAMLASEGVAQQLNETDMVAT 382

Query: 296 NITDMQGKQQQVEFATEEASKLVNHTTSIVQQSAKQAHAASEDIKNLVGDIEAVKQRIVE 355
            IT+M     ++   TE A+     T    Q    +       I+ L   I      + E
Sbjct: 383 AITEMGATIDEIAKTTELAALKAGKTHDNAQLGQSEVEQTILKIRQLSEQINTSASVVDE 442

Query: 356 LNNQTGQVSSILGVIKGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRHLASRTTEA 415
           L   +  + S+L VI+GIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR LA RT  +
Sbjct: 443 LERDSETIGSVLDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAMRTQSS 502

Query: 416 TGNIENIIAGFQRDSQASLSSVDTVCSHAHQRSSEVEELSAAMTRVVSEMQQVLSHAMGI 475
           T  I NII   Q  ++A +  +D       + + +       +  + ++++ ++  +  I
Sbjct: 503 TQEIANIIQTLQSRTRAIVQLMDASQKQGAESAEQAAAAGELLKLINNDVRNIMDMSTQI 562

Query: 476 QEQTKRTTEVSHEIQNKVDVITHHANNTSQSASETREISIDLEHLSQQLESLLNQFTL 533
               +  + V+ E+   V VI   A ++S++A      S +L   ++ L S ++ F +
Sbjct: 563 AAAIEEQSMVAAEVNKNVVVIRDIAEDSSRAADANASASDELRTRAEYLVSAVSHFKI 620