Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 579 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  167 bits (423), Expect = 1e-45
 Identities = 114/351 (32%), Positives = 183/351 (52%), Gaps = 12/351 (3%)

Query: 185 IMSVIALFGFMLTLFFMRRIIVLPLQKTSAFMCEVSKSKDLSHRLENDRKDELGQLAVSI 244
           ++ ++A+ GFM+    ++  IV PL +T + + ++ KSK+L+ R+    + E+G++   I
Sbjct: 235 LVILVAVGGFMI----VKSRIVTPLVQTCSELLDIQKSKNLARRISVSTQGEIGEIVNQI 290

Query: 245 NSLMDTVSDSLQQVQDTSHSLADSAKKLTNVAQVTDQAANNQQKETAEVQTNITDMQGKQ 304
           N  + +++ SL      +  +AD AK+     QV+ +++N   KE     + + +M    
Sbjct: 291 NLFISSLASSLATTDGIAKEVADLAKQTKASIQVSRESSNRVAKELDASASAMEEMTTTL 350

Query: 305 QQVEFATEEASKLVNHTTSIVQQSAKQAHAASEDIKNLVGDIEAVKQRIVELNNQTGQVS 364
             V  +T  A        + V         A   +  L  +    +  +  L N++ QVS
Sbjct: 351 VHVSESTSNAETRAAENENHVGVGQNTVSEALNAMAVLESEFTTTQDSMQHLVNESTQVS 410

Query: 365 SILGVIKGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRHLASRTTEATGNIENIIA 424
           ++L VIK IAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR LA RT ++T  I++I+A
Sbjct: 411 NVLSVIKAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAQRTQDSTKEIDDIVA 470

Query: 425 GFQRDSQASLSSVDTVCSHAHQRSSEVEELSAAMTRVVSEMQQVLSHAMGIQEQTKRTTE 484
             Q  +    SSV    +   + S E++ +      V  +++Q  +   GI  Q   +TE
Sbjct: 471 SLQNRTNQVGSSVTQAANLMQKASVELQRI----VTVFDDIRQSTAAIHGINTQVAASTE 526

Query: 485 ----VSHEIQNKVDVITHHANNTSQSASETREISIDLEHLSQQLESLLNQF 531
               VS EI   + VI  ++   SQ   +    SI L++ SQ L +   ++
Sbjct: 527 EQSLVSKEIATSLMVIRDNSREVSQIIEQIESTSISLDNQSQVLRTKAGEY 577