Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 545 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  164 bits (415), Expect = 8e-45
 Identities = 114/354 (32%), Positives = 182/354 (51%), Gaps = 20/354 (5%)

Query: 189 IALFGFMLTLFFMRRIIVLPLQKTSAFMCEVSKSK-DLSHRLENDRKDELGQLAVSINSL 247
           + +F F L L      I  PL      + ++++ + DLS RL    KDE+  LA + N  
Sbjct: 203 VPIFAFFLVL---NHSITSPLNDAIEALEDIAQGEGDLSQRLSTQGKDEVAHLAHAFNLF 259

Query: 248 MDTVSDSLQQVQDTSHSLADSAKKLTNVAQVTDQAANNQQKETAEVQTNITDMQGKQQQV 307
              + D +  +Q    SL + AK L    + ++Q+A +  +ET  V T +  M     ++
Sbjct: 260 AQKIGDMVGHLQPLGQSLDNDAKLLMLAVEESNQSAEHIHRETGSVATAVNQMLSTTHEM 319

Query: 308 EFATEEASKLVNHTTSIVQQSAKQAHAASEDIKNLVGDIEAVKQRIVELNNQTGQVSSIL 367
              T++A+       S  QQS         D + LV +++A +    +L   +GQ+ SIL
Sbjct: 320 ASNTQQAADAATSVKSQAQQSKGVIDNTVRDTEKLVQELKASEAITQKLGQASGQIGSIL 379

Query: 368 GVIKGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRHLASRTTEATGNIENIIAGFQ 427
            VI+ IAEQTNLLALNAAIEAARAG  GRGFAVVADEVR LA+RT ++T  I+ II+  Q
Sbjct: 380 DVIRAIAEQTNLLALNAAIEAARAGSHGRGFAVVADEVRALANRTQDSTNEIQKIISEIQ 439

Query: 428 RDSQASLSSVDTVCSHAHQRSSEVEELSAAMTRV------VSEMQQVLSHAMGIQEQTKR 481
               + + S       + +  ++ +E   AM  +      +S+M   L+ A   +EQ+  
Sbjct: 440 TGVGSVMQSNSQTQRQSEELQAKAQEAGQAMAAILELIAHISDMNTQLASA--TEEQSLV 497

Query: 482 TTEVSHEIQN--KVDVITHHANNTSQSASETREISIDLEHLSQQLESLLNQFTL 533
           T E++  I N  ++  ++  AN ++  A+++      L+ +SQ +   L QF +
Sbjct: 498 TEEINRNICNISELTEVSVKANESNSRAAQS------LQDISQDMSHTLGQFKI 545