Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 630 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  163 bits (413), Expect = 2e-44
 Identities = 114/402 (28%), Positives = 199/402 (49%), Gaps = 9/402 (2%)

Query: 136 MKSSENYRGTNCVACHIAPEGE--VLGVIRLEFNLNHLTQMVNHRTLIGVGIMSVIALFG 193
           M+  E   GT  V     P  +  ++ V+  +  ++  T +    + +GVG++    +FG
Sbjct: 234 MEERELDGGTQLVYVAAVPSTDWALIFVMNKQEIMSQATSLAWWMSAVGVGLL---VIFG 290

Query: 194 FMLTLFFMRRIIVLPLQKTSAFMCEVSKSK-DLSHRLEN-DRKDELGQLAVSINSLMDTV 251
            +L   F  +     L++ +  + ++++   DL+ R+   +  DE+G LA   N  ++ +
Sbjct: 291 LVLVAIFKMQF--KDLERVALALNDIAEGDGDLTVRIHTANSHDEIGILASGFNRFVERL 348

Query: 252 SDSLQQVQDTSHSLADSAKKLTNVAQVTDQAANNQQKETAEVQTNITDMQGKQQQVEFAT 311
              + ++ + +  L   AK  +  A    Q    QQ E   V T +T+M    +++    
Sbjct: 349 HGMISRMHNIAGQLEYQAKGSSASAADNSQRIEVQQDEVTMVATAVTEMASATEEIASNA 408

Query: 312 EEASKLVNHTTSIVQQSAKQAHAASEDIKNLVGDIEAVKQRIVELNNQTGQVSSILGVIK 371
           E  ++   +  S+     KQ   + + I+NL  +++   + I ELN  + +++SIL  I 
Sbjct: 409 EHTAQTAQNAVSLSNHGQKQVMQSQQSIRNLANEVDTAGRIISELNEHSQKINSILLTIS 468

Query: 372 GIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRHLASRTTEATGNIENIIAGFQRDSQ 431
           GIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR L+ RT  +T  I+ +I   Q+ + 
Sbjct: 469 GIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLSQRTHSSTQEIQAMIETLQQTAG 528

Query: 432 ASLSSVDTVCSHAHQRSSEVEELSAAMTRVVSEMQQVLSHAMGIQEQTKRTTEVSHEIQN 491
            ++ S+      A    ++    S ++ ++   + ++   A  I    +  T V+ EI  
Sbjct: 529 KAVKSMTQSHDMAETSVADANSASESLLQISKAINEISDMASQIATAAEEQTSVTSEINR 588

Query: 492 KVDVITHHANNTSQSASETREISIDLEHLSQQLESLLNQFTL 533
             + I   + N S  A      S +L HL+  L+  +++F L
Sbjct: 589 NTESIREVSENLSIEAQSAMVQSQELAHLAASLQQEVSRFKL 630