Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 634 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  205 bits (521), Expect = 5e-57
 Identities = 129/379 (34%), Positives = 205/379 (54%), Gaps = 2/379 (0%)

Query: 156 GEVLGVIRLEFNLNHLTQMVNHRTLIGVGIMSVIALFGFMLTLFFMRRIIVLPLQKTSAF 215
           G+  GV+ +  + +H  Q ++   L  + ++ VIAL       +F+ + I  P+ +T+  
Sbjct: 257 GKTFGVLDIALDRSHSEQAMSDIRLKLI-MIGVIALLIGTAIAWFIAKSITRPIAETTDA 315

Query: 216 MCEVSKSK-DLSHRLENDRKDELGQLAVSINSLMDTVSDSLQQVQDTSHSLADSAKKLTN 274
           + ++++ + DL+ R+E   KDE+ QLA + N   + +  ++ QV D++  LA SA++++ 
Sbjct: 316 LNDIAEGEGDLTRRIEVKSKDEMAQLAQAFNRFAEKIHATVAQVSDSTSLLATSAEEMSA 375

Query: 275 VAQVTDQAANNQQKETAEVQTNITDMQGKQQQVEFATEEASKLVNHTTSIVQQSAKQAHA 334
           +   T Q AN Q  ET +V T + +M    Q+V     +A+    H +   +Q       
Sbjct: 376 ITHETQQMANRQHLETEQVATAMNEMAATVQEVAHNATDAADAATHASESTEQGKLLVEK 435

Query: 335 ASEDIKNLVGDIEAVKQRIVELNNQTGQVSSILGVIKGIAEQTNLLALNAAIEAARAGEQ 394
               I  L  +I      I EL   T Q+ S+L VI+ IA+QTNLLALNAAIEAARAGEQ
Sbjct: 436 VISTISLLADEIAQAANAINELERNTTQIDSVLVVIRNIADQTNLLALNAAIEAARAGEQ 495

Query: 395 GRGFAVVADEVRHLASRTTEATGNIENIIAGFQRDSQASLSSVDTVCSHAHQRSSEVEEL 454
           GRGFAVVADEVR LASRT  +T  I+ +I   Q+ ++A++SS++T  +      S V E 
Sbjct: 496 GRGFAVVADEVRTLASRTQASTTEIQQMIETLQQSAKATVSSMNTSTATTQSCVSLVHEA 555

Query: 455 SAAMTRVVSEMQQVLSHAMGIQEQTKRTTEVSHEIQNKVDVITHHANNTSQSASETREIS 514
            +A+  +   +  +    + I         VS EI   V+ I   A N ++SA +T    
Sbjct: 556 GSALEAITQAVSTISQMNIQIASAANEQCAVSAEINKNVNNINDIATNATESAMQTARAG 615

Query: 515 IDLEHLSQQLESLLNQFTL 533
            +L  LS +L +LL+QF +
Sbjct: 616 DELAQLSMRLTTLLSQFKI 634



 Score = 34.3 bits (77), Expect = 1e-05
 Identities = 35/177 (19%), Positives = 65/177 (36%), Gaps = 20/177 (11%)

Query: 380 LALNAAIEAARAGEQGRGFAVVADEVRHLASRTTEATGNIE--------NIIAGFQRDSQ 431
           L +  AI    A    R  A   D +  +A    + T  IE         +   F R ++
Sbjct: 291 LLIGTAIAWFIAKSITRPIAETTDALNDIAEGEGDLTRRIEVKSKDEMAQLAQAFNRFAE 350

Query: 432 ASLSSVDTVCSHAHQRSSEVEELSAAMTRVVSEMQQVLSH--------AMGIQEQTKRTT 483
              ++V  V       ++  EE+SA    +  E QQ+ +         A  + E      
Sbjct: 351 KIHATVAQVSDSTSLLATSAEEMSA----ITHETQQMANRQHLETEQVATAMNEMAATVQ 406

Query: 484 EVSHEIQNKVDVITHHANNTSQSASETREISIDLEHLSQQLESLLNQFTLIAKNSAR 540
           EV+H   +  D  TH + +T Q      ++   +  L+ ++    N    + +N+ +
Sbjct: 407 EVAHNATDAADAATHASESTEQGKLLVEKVISTISLLADEIAQAANAINELERNTTQ 463