Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 495 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  190 bits (482), Expect = 1e-52
 Identities = 146/501 (29%), Positives = 242/501 (48%), Gaps = 41/501 (8%)

Query: 35  LIHSVLSEQLHDKASNYFDSLNMMMLTGTMAQKETLRQKALAQDGIEQVRVIRAPSLNKI 94
           +I SVL    +  AS+   S  M     T+A  +    + +     EQ+R + +  L   
Sbjct: 18  MIVSVLFGVSYWLASDTLASNEMAFEDNTVANLQVTMAQPIFTYDYEQIRAVLSVMLK-- 75

Query: 95  YGPGSTDQQPKDEIDQRALQGETIIEPYQADWGKGIVVALPMKSSENYRGTNCVACHIAP 154
               S        +D R   G+ + E  QA+    IV A  +++ E            + 
Sbjct: 76  ----SEQIYQITVVDHR---GKLLAEDKQAE----IVAASDLQTRE---------LQFSD 115

Query: 155 EGEVLGVIRLEFNLNHLTQMVNHRTLIGVGIMSVIALFGFMLTLFF-MRRIIVLPLQKTS 213
           +G   G + + F+   +   ++   L+G  + +++ L G +L +F  ++R+++ PL K  
Sbjct: 116 QGNPTGRLTIAFSTLPVKAQLSD-LLLGYFLQALLILAGSLLVIFIILKRLVISPLDKVV 174

Query: 214 AFMCEVSKSK-DLSHRLENDRKDELGQLAVSINSLMDTVSDSLQQVQDTSHSLADSAKKL 272
           A + E++    DLSHRL  + +DE+G+LA + N  ++ +  ++ +V +TS  L   AK L
Sbjct: 175 AALEEIANGDGDLSHRLPVESEDEIGKLANAFNGFVEQIHGTITRVHETSGLLLGDAKAL 234

Query: 273 TNVAQVTDQAANNQQKETAEVQTNITDMQGKQQQVEFATEEASKLVNHTTSIVQQSAKQA 332
             ++Q  +Q    Q KET    T +T +     +V    +  +         V    +Q 
Sbjct: 235 GTLSQSNNQRVQAQLKETEAAVTAVTQLSASANEVAINAKRTADAATQADRAVDDGQRQF 294

Query: 333 HAASEDIKNLVGDIEAVKQRIVELNNQTGQVSSILGVIKGIAEQTNLLALNAAIEAARAG 392
            +     + L G++    Q + +L  +T ++  ++ VI  IAEQTNLLALNAAIEAARAG
Sbjct: 295 DSGLAITRQLAGELARSAQSVSQLQQETQRIDEVVVVISSIAEQTNLLALNAAIEAARAG 354

Query: 393 EQGRGFAVVADEVRHLASRTTEATGNIENIIAGFQ---RDSQASLSSVDTVCSHAHQRSS 449
           EQGRGFAVVADEVR LASRT +ATG I+ +I   Q    ++   + S  T+ +    RS 
Sbjct: 355 EQGRGFAVVADEVRSLASRTQQATGEIQKMIQQVQSRVAETVNVMQSSQTLSNQGVNRSE 414

Query: 450 EVEELSAAMTRVVSEMQQVLSHAMGIQEQTKRTTEVSHEIQNKVDVITHHANNTSQSASE 509
           E++ + + +T +VS +  +               EVSH  Q +  V    +   +  A+ 
Sbjct: 415 EIKLVLSKVTDLVSNISNM-------------NIEVSHAAQEQTCVTEAISRTLNDLANV 461

Query: 510 TREISIDLEHLSQQLESLLNQ 530
           +   S+D EHL+Q  E L +Q
Sbjct: 462 SGSASLDSEHLAQSSERLFHQ 482