Pairwise Alignments

Query, 637 a.a., cyclic nucleotide-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 629 a.a., cyclic nucleotide-binding protein (RefSeq) from Shewanella loihica PV-4

 Score =  927 bits (2396), Expect = 0.0
 Identities = 451/629 (71%), Positives = 534/629 (84%)

Query: 9   MDAELIEIQQFLQQHPPFDALPNERLPEIAQQIEIAYFRKDTPIIGYKQAISDLYLVRSG 68
           M+AEL EIQ FL Q+PPF+ALP+E +  ++  +EIAY+R+DTPII +   I DLY+VRSG
Sbjct: 1   MEAELNEIQNFLSQYPPFNALPDEVVAMVSHHVEIAYYRQDTPIIHFGDQIHDLYMVRSG 60

Query: 69  AVEVYRRHGELYNRLTEGSLFGQMGLLTRNQVSFAVTAIEDTLLYCLPEALFHRLHQEFD 128
            VEVYRR GELYNRL  G LFGQMGLLT N+V F V AIEDTL+YC+PEA+F +L+ ++D
Sbjct: 61  VVEVYRRKGELYNRLDSGDLFGQMGLLTNNKVRFPVKAIEDTLVYCIPEAIFQQLYDQYD 120

Query: 129 SFADFVEVEQAVRLRQTVAKQKEQNDLITSKVKQLLTRSAPTIDKQASIQQAAQRMADEN 188
           +FADFVEVE + RLRQTV+   EQNDL TSKVK LLTR AP I K  SIQQAA  MA EN
Sbjct: 121 TFADFVEVEDSARLRQTVSNTSEQNDLTTSKVKTLLTRDAPVIHKGESIQQAAIMMAQEN 180

Query: 189 VSALLILDNQILLDTEDDSTPMVGIVTERDLCRRVLAQGMDVTQTVSQVMTHEVISLDHN 248
           VSALL++D  +L D + D++P++GI+T+RDLC RV+A+G+D    ++ V++ EVI+LDHN
Sbjct: 181 VSALLVIDPDVLEDEDGDTSPLLGIITDRDLCTRVVAEGIDPATELAGVVSTEVITLDHN 240

Query: 249 AYVYEAMLAMLRNNVHHLPVLRERQPIGIIDMTDIVRHESQNSLLLVSRIYQQTCIDDLA 308
           AYVYEAML MLR NVHHLPV + R+PIGII+ TDIVR+ESQNSLLLVS I+QQ  +++LA
Sbjct: 241 AYVYEAMLTMLRYNVHHLPVCKGRKPIGIIEATDIVRYESQNSLLLVSSIFQQQSLEELA 300

Query: 309 QLANEVKASFVRLVNEDANSHMIGTAMSTIGRAFTQRIIELVEAELGAAPLPYCFVAFGS 368
            LA +VK SFVRLVNEDANSHM+G+AMS IGR+F QRI+EL E +LG  P+PYCF+A GS
Sbjct: 301 ALATQVKDSFVRLVNEDANSHMVGSAMSVIGRSFKQRILELAEEKLGPPPIPYCFLALGS 360

Query: 369 MGRDEQLIVTDQDNALILDDRYDVQQHGAYFAQFAELVCRGLDRCGYPLCDGEIMASNPK 428
           MGRDEQLIVTDQDNA+ILDD +D  +H  YF+Q A  VC GLD CGY  C G+IMA+NP 
Sbjct: 361 MGRDEQLIVTDQDNAIILDDDFDKAKHDDYFSQLANFVCDGLDSCGYSYCTGDIMATNPM 420

Query: 429 WRMTRKEWETCFADWIDNPNPQALLNASIFFDLDGVYGRTKWAEQLSGFIVRRARRNQRF 488
           WRMTRKEWE CFADWID+PNP+ALLNASIFFDLDGVYGR KWAEQL+GFIVRRAR+N RF
Sbjct: 421 WRMTRKEWEACFADWIDDPNPKALLNASIFFDLDGVYGRLKWAEQLNGFIVRRARKNNRF 480

Query: 489 LACLARNALNRTPPLGFFKNFVMEKDGRHNNSINLKRRGTAPLADLIRVHALAAGSRAKN 548
           LACLARNALNRTPPLGFFK+FVMEKDGRHNNSINLKRRGTAPLADLIRVHALA GSRA+N
Sbjct: 481 LACLARNALNRTPPLGFFKDFVMEKDGRHNNSINLKRRGTAPLADLIRVHALAVGSRARN 540

Query: 549 SFERLDDVIEAGLLPQGKGKDLRDALEFIAMVRIRHQAIDVEQEREADNSIEPEHLSDFE 608
           SFERLDD+I+A +LP+G+G+DLRDA+EFI+MVRIRHQA+DVEQ  + DN+IEPEHLSDFE
Sbjct: 541 SFERLDDIIDANILPKGRGEDLRDAMEFISMVRIRHQALDVEQGIDPDNNIEPEHLSDFE 600

Query: 609 RRNLKDAFQILSNGQNYLKYRYQANQHFK 637
           RRNLKDAFQILSN QN+LK+RY A+  FK
Sbjct: 601 RRNLKDAFQILSNAQNFLKFRYNASNQFK 629