Pairwise Alignments

Query, 236 a.a., 3'-5' exonuclease from Vibrio cholerae E7946 ATCC 55056

Subject, 235 a.a., DNA polymerase III subunit epsilon from Pseudomonas fluorescens FW300-N2C3

 Score = 53.5 bits (127), Expect = 3e-12
 Identities = 51/196 (26%), Positives = 81/196 (41%), Gaps = 13/196 (6%)

Query: 22  ARQTHLQRFYA-QPLVEGSTPIHQCSLVALDFETTGLNAEQDAIVSIGLVPFTTQRIFLS 80
           A Q  L+R  A  PL EG     +   V LD ETTGLN  +D ++SIG V      I  S
Sbjct: 17  ALQQRLERLPAPSPLGEGDLRAQRW--VVLDLETTGLNLNKDQVLSIGAVVIEDGAIDFS 74

Query: 81  QARYWLVKPSQPLEDESIVFHGITHSELQHAQAPEQVLKELLEALHGKIVVVHFRHIERD 140
           Q     ++ +Q     S++ HG+  S +     P + L   +  +    ++      +  
Sbjct: 75  QQFERTLQCNQQKLGPSVLIHGLAPSAIAAGSDPAEALLAFMAFVGDSPLLAFHAPFDSH 134

Query: 141 FLRQISLNIWGEAIEFPVLDTLEIERQLLDKQRSLWQRIARRPLPSIRLGQSRMRYHLPP 200
            L +   +  G  ++ P LD  ++   L  +            L    L +    + L  
Sbjct: 135 MLGRALKDHLGYRLQHPFLDVADLAPMLCPQAN----------LRKSGLDEWIDWFKLQV 184

Query: 201 YSPHHALTDAIATAEL 216
           +  H+A  DA+ATAEL
Sbjct: 185 FDRHNASADALATAEL 200