Pairwise Alignments

Query, 236 a.a., 3'-5' exonuclease from Vibrio cholerae E7946 ATCC 55056

Subject, 226 a.a., exonuclease, RNase T and DNA polymerase III (RefSeq) from Shewanella loihica PV-4

 Score =  107 bits (268), Expect = 1e-28
 Identities = 68/182 (37%), Positives = 98/182 (53%), Gaps = 7/182 (3%)

Query: 41  PIHQCSLVALDFETTGLNAEQDAIVSIGLVPFTTQRIFLSQARYWLVKPSQPLEDESIVF 100
           P  +  L+A+D E TGLNA  D I+SIG+VP    ++ LS+A++ LV+    +  +S   
Sbjct: 37  PFAEAELLAIDLEMTGLNASFDQILSIGVVPIRQGQLILSEAQHKLVQIEGSV-GQSATI 95

Query: 101 HGITHSELQHAQAPEQVLKELLEALHGKIVVVHFRHIERDFLRQISLNIWGEAIEFPVLD 160
           HGI  + L  A  PEQ +   L    G ++V H   ++  FL+       GE      +D
Sbjct: 96  HGILDTHLDAALTPEQAMAWFLSVSEGMVLVAHHAPLDLAFLQSGLQACLGEKPRLLAID 155

Query: 161 TLEIERQLLDKQRSLWQRIARRPLPSIRLGQSRMRYHLPPYSPHHALTDAIATAELFQAQ 220
           TL +E+Q L +Q+   Q         +RLG+SR RY LP Y+ H+AL DA+A  EL  AQ
Sbjct: 156 TLLLEKQRLLRQQEHLQE------GCLRLGRSRARYGLPVYAAHNALIDALACGELLLAQ 209

Query: 221 CA 222
            A
Sbjct: 210 VA 211