Pairwise Alignments

Query, 631 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 629 a.a., chemotaxis protein from Pseudomonas fluorescens FW300-N2C3

 Score =  302 bits (773), Expect = 3e-86
 Identities = 200/635 (31%), Positives = 318/635 (50%), Gaps = 20/635 (3%)

Query: 7   LTLKHKLIGASLSAVVVMATALTWFSASQLQQQTSNAVYTRADAISSTAAKGISDWISIR 66
           L   HK++  + + V+ +  + + F+  + +  T  A+++   A        +  W++ R
Sbjct: 5   LKFGHKILLGACAIVMTVFLSFSLFNDHRQEASTREALHSNLQATGQLLGANLGSWLAGR 64

Query: 67  ----KSISTAFNAHIEAQNVVPYLQQARNAGGFDDIFYGTTDGAMYRSHPERNRAD-YDP 121
               +  +    AH     +   L Q      F   + G  D   +  HPER   D YD 
Sbjct: 65  ILLIEGAAETVAAHPTPDTISRVLSQDIITKTFIASYVGLEDSRFF-IHPERVMPDGYDV 123

Query: 122 RTRPWYKDAASAGKQIITTAYSDAITGALLVTIAEPVRLNGNMSGVVGADVLIDQLIADV 181
           R R WYKDAA   + ++T  Y  A    L++T A P+++NG   GV+GA + ++QL   +
Sbjct: 124 RQRSWYKDAARTLQPVLTEPYIGAGIDYLIMTQAAPIKVNGKAVGVLGASLSLEQLAKII 183

Query: 182 ISMDAGKNAQTMLIDGQNGSFLAHPDKSLLLKPVTTLSSALDMR--TIERAANQGELLAL 239
            ++D        L+   +G  L HPD + + +   TL+ A      +I RA N+     +
Sbjct: 184 NAVDLNGIGYAFLVS-DDGKILVHPDSTRVTQ---TLAQAFPEGPPSINRALNE-----V 234

Query: 240 KLNGVEKFFFFTAVPDTP---WYFAVQMDSDTEYASHSELLTGLITTALLITVIVVVIVS 296
           + NG  +   FT +   P   W   + +D D  YA+  E  T  +   L+  +++V ++ 
Sbjct: 235 QENGQARIVTFTPIDGLPSLHWSIGLSVDKDKAYAALHEFRTSALIATLIAMLVMVGLLG 294

Query: 297 WLVSFLFRDLGRVSKALEEIASGDADLTQRLEPRSDDEVGQLASNFNTFVSNMHTMVLKL 356
            L++ L R L  +  A++ IA G+ DLTQRL   S DE G +A+ FN FV  +   + ++
Sbjct: 295 LLINALMRPLRSMGLAMQSIADGEGDLTQRLHSLSRDEFGLMAAGFNRFVERIQQSIREV 354

Query: 357 SHVSAALAQQSKVTAAQAEERSSRIRLQQDEINMVATAINEMAAATQEIAGNADHTAQNA 416
              S  L Q +   +  +         Q    + VATAINE+ AA QEIA +A H +  A
Sbjct: 355 LASSIQLTQLASQVSQASNSSLKSSDTQAALTHNVATAINELGAAAQEIARSAAHASSRA 414

Query: 417 GEAVTACVHGAGQVTQTQRSIQSLAEEVQVATEVIQELEAHGHQISTILSTIQNIAEQTN 476
            +       G   V Q+  ++  L+ +V    + I+ L     +I  IL  I+ I++QTN
Sbjct: 415 SDTRDRTREGQSVVQQSISAMSQLSSQVVNTRQDIESLNEKTLKIGRILDVIKGISDQTN 474

Query: 477 LLALNAAIEAARAGEQGRGFAVVADEVRVLSQRTHASTKEIQQMIETLQATTGKAVGIMD 536
           LLALNAAIEAARAG+ GRGFAVV+DEVR L+ RT  S +EI  MIE LQA  G AV  M 
Sbjct: 475 LLALNAAIEAARAGDAGRGFAVVSDEVRTLAHRTQQSAQEIHGMIEALQANAGNAVSAML 534

Query: 537 DSRRLADTSVDDANEASVSLEQIHKTVERISDMATQIASAAEEQASVTSEITRNTVGIRD 596
           +S+R +D +V+ A  A   L+++   +  I ++   +A+A EEQ SV   + R+   I D
Sbjct: 535 ESQRYSDDNVNTAKLAGERLDRVLLGIGEIDEINLSVATATEEQTSVVDNLDRDISHIND 594

Query: 597 VSNDLAQEAHSAAEQAAELSELSHELEQEIRRFKL 631
           ++ ++     S  +   EL + S  L+Q +  FK+
Sbjct: 595 LNQEMVGNLQSTLQACTELEDQSRRLQQMVNTFKI 629