Pairwise Alignments

Query, 631 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 528 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  220 bits (561), Expect = 1e-61
 Identities = 132/311 (42%), Positives = 186/311 (59%)

Query: 319 GDADLTQRLEPRSDDEVGQLASNFNTFVSNMHTMVLKLSHVSAALAQQSKVTAAQAEERS 378
           GD  + Q +     DE GQ+A       +    MV ++   S  L+Q +       +  +
Sbjct: 212 GDNPVGQLIYAGRRDEYGQIAFAMKMLETEAGAMVGRIGDASRQLSQHAHELLGAMDSST 271

Query: 379 SRIRLQQDEINMVATAINEMAAATQEIAGNADHTAQNAGEAVTACVHGAGQVTQTQRSIQ 438
                QQ E + VATAIN+MAA+ QE+A NA  TA+ A  A +    G   V +T  +I 
Sbjct: 272 QSASRQQSETDQVATAINQMAASVQEVANNAQRTAEAASRADSETATGTEVVNRTGAAIG 331

Query: 439 SLAEEVQVATEVIQELEAHGHQISTILSTIQNIAEQTNLLALNAAIEAARAGEQGRGFAV 498
            LA+++Q A +VI ELEAH + I+ +L  I+ IAEQTNLLALNAAIEAARAGEQGRGFAV
Sbjct: 332 QLAQDIQQAGDVIHELEAHSNDITKVLDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAV 391

Query: 499 VADEVRVLSQRTHASTKEIQQMIETLQATTGKAVGIMDDSRRLADTSVDDANEASVSLEQ 558
           VADEVR L+ RT  ST+EI  MI  LQ    +AV +M  SR  A  SV+ A +A+ SL  
Sbjct: 392 VADEVRNLASRTQQSTQEINGMIGALQGGARQAVEVMQRSREQAMQSVEHAAQAARSLHG 451

Query: 559 IHKTVERISDMATQIASAAEEQASVTSEITRNTVGIRDVSNDLAQEAHSAAEQAAELSEL 618
           I+  V  IS+M+ QIA+A E+Q++V+  I +N V IR  S+        + + A+ ++EL
Sbjct: 452 INSRVTEISEMSQQIAAAVEQQSAVSENINQNIVSIRGGSDHHVANGLRSRQSASGVAEL 511

Query: 619 SHELEQEIRRF 629
           ++ +E  +++F
Sbjct: 512 ANSMEVLVQQF 522