Pairwise Alignments

Query, 631 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 629 a.a., Histidine kinase, HAMP region:Cache:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  340 bits (871), Expect = 1e-97
 Identities = 217/637 (34%), Positives = 334/637 (52%), Gaps = 24/637 (3%)

Query: 7   LTLKHKLIGASLSAVVVMATALTWFSASQLQQQTSNA-VYTRADAISSTAAKGISDWISI 65
           L   HK++ A+ S VV+ A  L  F    LQ+   +  +    +  S + A  I +W+S 
Sbjct: 5   LKFSHKILLAA-SLVVIAAFTLFTFYNDYLQRNALHVQLKENLNQTSESTAGNIRNWLSG 63

Query: 66  R----KSISTAFNAHIEAQNVVPYLQQARNAGGFDDIFYGTTDGAMYRSHPERNRADYDP 121
           R    ++++   ++    Q     L Q      F  I+ G +DG+     P+   ADYDP
Sbjct: 64  RILLVENLAENASSPQSPQEQNRVLGQPTLIATFMSIYQGRSDGSFVTQPPDDMSADYDP 123

Query: 122 RTRPWYKDAASAGKQIITTAYSDAITGALLVTIAEPVRLNGNMSGVVGADVLIDQLIADV 181
           RTRPWY DA  AGK I+T  Y DA+T  L+VT+A P++ +  +SGV+G D+ ++ L+  +
Sbjct: 124 RTRPWYVDALRAGKTILTEPYLDAVTKGLVVTLATPIKGDSGVSGVIGGDLSLEILVKMI 183

Query: 182 ISMDAGKNAQTMLIDGQNGSFLAHPDKSLLLKPVTTLSSALDMRTIERAANQGELLALKL 241
            S+    +    L+D  NG  L HPD SL++K   TL+      T   + +  E      
Sbjct: 184 SSLRMHGDGYAFLVDA-NGRILVHPDTSLVMK---TLAEVYPANTPRLSQDLSESEYAGK 239

Query: 242 NGVEKFFFFTAVPDTPWYFAVQMDSDTEYASHSELLTGLITTALLITVIVVVIVSWLVSF 301
             +  F     +P   WY  V MD D  YA+  E     I   ++  V++++++  L+S 
Sbjct: 240 TQILTFAHVDGLPSVNWYVGVAMDKDIAYAALGEFRNSAIVATVIAVVLIILLLGMLLSV 299

Query: 302 LFRDLGRVSKALEEIASGDADLTQRLEPRSDDEVGQLASNFNTFVSNMH-------TMVL 354
           L R L  + +A+ +IA+G+ DLT+RL   S DE G L + FN FV  +H       +  +
Sbjct: 300 LLRPLNLMGRAMHDIAAGEGDLTKRLVIESQDEFGHLGNGFNLFVERIHDSMREVASSTV 359

Query: 355 KLSHVSAALAQQSKVTAAQAEERSSRIRLQQDEINMVATAINEMAAATQEIAGNADHTAQ 414
           +L+ V+  +   S  +   ++++S R        N VA AINE+ AATQEIA NA   + 
Sbjct: 360 QLNEVALRVLNASNSSMLNSDQQSHRT-------NSVAAAINELGAATQEIAQNAARASG 412

Query: 415 NAGEAVTACVHGAGQVTQTQRSIQSLAEEVQVATEVIQELEAHGHQISTILSTIQNIAEQ 474
           ++ +A T    G   V Q   ++  L++ +  A+  I+ L      I  IL  I  I++Q
Sbjct: 413 HSSDARTLASDGQDVVGQNIEAMSRLSKRISSASGQIETLNTKTANIGQILDVITGISQQ 472

Query: 475 TNLLALNAAIEAARAGEQGRGFAVVADEVRVLSQRTHASTKEIQQMIETLQATTGKAVGI 534
           TNLLALNAAIEAARAGE GRGFAVVADEVR L+ RT  S  ++Q+MIE LQ+   +AV I
Sbjct: 473 TNLLALNAAIEAARAGEAGRGFAVVADEVRSLAHRTQESASQVQEMIEQLQSGAREAVSI 532

Query: 535 MDDSRRLADTSVDDANEASVSLEQIHKTVERISDMATQIASAAEEQASVTSEITRNTVGI 594
           M+DS+R +  +V  AN+A  SLE + + +  I  M   +A+A EEQ +V   I  +   I
Sbjct: 533 MNDSQRESVETVGIANKAVASLEHVTERIGEIDGMNQSVAAATEEQTAVVEAINVDITEI 592

Query: 595 RDVSNDLAQEAHSAAEQAAELSELSHELEQEIRRFKL 631
             ++    +  ++      +L + S  L Q +  F++
Sbjct: 593 NTLNQQGVENLNATLRACTDLEQQSTRLTQLVGSFRI 629