Pairwise Alignments

Query, 631 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 570 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  233 bits (594), Expect = 2e-65
 Identities = 143/382 (37%), Positives = 210/382 (54%), Gaps = 11/382 (2%)

Query: 259 YFAVQMDSDTEYASHSELLTGLITTALLITVIVVVIVSWLVSFLF---------RDLGRV 309
           Y  V +DS+             +  + ++ + + V++++LV+ +          R L   
Sbjct: 191 YMRVMIDSNNRQIKEGAAAAADLKASSVLMLEIGVVIAFLVAIMLGVLITRMITRPLAVA 250

Query: 310 SKALEEIASGDADLTQRLEPRSDDEVGQLASNFNTFVSNMHTMVLKLSHVSAALAQQSKV 369
             + + IA GD  LTQ +   S DE GQL +  +     +   + +++  S  LA  ++ 
Sbjct: 251 VASAQRIAGGD--LTQPIVSTSGDEAGQLLNALSDMQGGLKNTIQQIASASDQLASAAEE 308

Query: 370 TAAQAEERSSRIRLQQDEINMVATAINEMAAATQEIAGNADHTAQNAGEAVTACVHGAGQ 429
            +A  +E +  +  Q DEI   ATA+N+M AA +E+A NA  T++ +  A    V G GQ
Sbjct: 309 LSAVTDESTRGLTRQNDEIQQAATAVNQMTAAVEEVARNAVSTSEASKSATDDAVDGRGQ 368

Query: 430 VTQTQRSIQSLAEEVQVATEVIQELEAHGHQISTILSTIQNIAEQTNLLALNAAIEAARA 489
           V  T + I ++  E+  +T  + EL  H  +IS +L  I++IAEQTNLLALNAAIEAARA
Sbjct: 369 VDHTVKGITTMVHEITASTGAVSELAGHVREISKVLDVIRSIAEQTNLLALNAAIEAARA 428

Query: 490 GEQGRGFAVVADEVRVLSQRTHASTKEIQQMIETLQATTGKAVGIMDDSRRLADTSVDDA 549
           GEQGRGFAVVADEVR L+ RT AST EI+ MI T+Q+    AV  M  S  LA  + + A
Sbjct: 429 GEQGRGFAVVADEVRALAHRTQASTVEIEGMISTVQSGADGAVAAMGKSLSLATNTQELA 488

Query: 550 NEASVSLEQIHKTVERISDMATQIASAAEEQASVTSEITRNTVGIRDVSNDLAQEAHSAA 609
             A  +LE+I   V  I++    IASA+EEQA V  E+ RN + I+D+S   A  A+  +
Sbjct: 489 LRAGAALEKITLGVATINERNLVIASASEEQAQVAREVDRNLINIQDLSTQSAAGANQTS 548

Query: 610 EQAAELSELSHELEQEIRRFKL 631
             + ELS L+      +  FKL
Sbjct: 549 ASSQELSRLATSFNSLVANFKL 570