Pairwise Alignments

Query, 631 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 629 a.a., Histidine kinase, HAMP region:Cache:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  324 bits (831), Expect = 6e-93
 Identities = 210/626 (33%), Positives = 328/626 (52%), Gaps = 20/626 (3%)

Query: 7   LTLKHKLIGASLSAVVVMATALTWFSASQLQQQTSNAVYTRADAISSTAAKGISDWISIR 66
           L    K++ A+   VVV  +     +  + +Q   ++V +    + +   + I  W+  R
Sbjct: 4   LGFSKKILLAAALIVVVAFSVFIVVNDYRQRQSLKSSVKSELQQLGTLTTQNIQTWLESR 63

Query: 67  KSISTAFNAHIEAQNV-VPYLQQARNAGGFDDIF----YGTTDGAMYRSHPERNR-ADYD 120
             +  + +  I A    +P LQ+A     + + F    +G+T+G M+ S P  NR ADYD
Sbjct: 64  MQLLQSMSQQIAADGKELPQLQRAIGLPAYSESFQLSYFGSTEGVMF-SVPSANRPADYD 122

Query: 121 PRTRPWYKDAASAGKQIITTAYSDAITGALLVTIAEPVRLNGNMSGVVGADVLIDQLIAD 180
           PR R WYK A +A   I+T  Y  A +G L++T+A PV+      GV GAD+ +D +   
Sbjct: 123 PRARGWYKAAQNAPGTIVTEPYIAASSGKLVMTMATPVKFQNQFVGVAGADIALDNVTKI 182

Query: 181 VISMDAGKNAQTMLIDGQNGSFLAHPDKSLLLKPVTTLSSALDMRTIERAANQGELLALK 240
           + S++   +    L+   +G  L HPD  L+LK    +S A    T +      E+ + K
Sbjct: 183 INSLNFDGHGYAFLVSA-DGKILVHPDSKLVLK---NISEAYPTNTPKITTGVTEIDSGK 238

Query: 241 LNGVEKFFFFTAVPDTPWYFAVQMDSDTEYASHSELLTGLITTALLITVIVVVIVSWLVS 300
              +  F     V    WY A+ ++ D+ YA  +E     IT  +++ V++++++  L+ 
Sbjct: 239 NPEIISFTPVQGVSTANWYVALVLEQDSAYAMLAEFRASAITAMVVVVVVIILLLGLLIR 298

Query: 301 FLFRDLGRVSKALEEIASGDADLTQRLEPRSDDEVGQLASNFNTFVSNMHTMVLKLSHVS 360
            L + L ++ +A+ +IA G+ DLT+RL   S DE G+LA +FN FV  +HT + +++  +
Sbjct: 299 VLMQPLHQMGRAMRDIADGEGDLTKRLAITSQDEFGELAESFNRFVERIHTSIREVASTA 358

Query: 361 AALAQQSKVTAAQAEERSSRIRLQQDEINMVATAINEMAAATQEIAGNADHTAQNAGEAV 420
           A L + +      +         Q +    VA AINE+ AA QEIA NA  T+Q + +A 
Sbjct: 359 AQLGEVATRVVKVSNASMGNSDQQANRTESVAAAINELGAAAQEIAQNAARTSQQSSDAS 418

Query: 421 TACVHGAGQVTQTQRSIQSLAEEVQVATEVIQELEAHGHQISTILSTIQNIAEQTNLLAL 480
                G   V QT +++  L+ ++  +   I+ L      I  IL  I +I++QTNLLAL
Sbjct: 419 GLASDGQNVVQQTIKAMNELSGKISESCVNIESLNGKTANIGQILEVITSISQQTNLLAL 478

Query: 481 NAAIEAARAGEQGRGFAVVADEVRVLSQRTHASTKEIQQMIETLQATTGKAVGIMDDSRR 540
           NAAIEAARAGE GRGFAVVADEVR L+ RT  S +++Q MIE LQ     AV  M +S+R
Sbjct: 479 NAAIEAARAGEAGRGFAVVADEVRNLAHRTQDSAQQVQTMIEELQVGARDAVTNMTESQR 538

Query: 541 LADTSVDDANEASVSLEQIHKTVERISDMATQIASAAEEQASVTSEI--------TRNTV 592
            ++ SV  AN A   L  + + +E I+ M   +A+A EEQ SV   I        T N +
Sbjct: 539 QSEDSVGIANLAGERLGSVTRRIEEINGMNQSVAAATEEQTSVVESINVDITHINTLNQL 598

Query: 593 GIRDVSNDLAQEAHSAAEQAAELSEL 618
           G+ ++   L +  +S  EQAA L +L
Sbjct: 599 GVDNLRQTL-EACNSLEEQAARLQQL 623



 Score = 38.9 bits (89), Expect = 7e-07
 Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 13/126 (10%)

Query: 503 VRVLSQRTHASTKEIQQMIETLQATTGKAVGIMDDSRRLADTSVDDANEASVSLEQIHKT 562
           +RVL Q  H   + ++ + +          G  D ++RLA TS D+  E +   E  ++ 
Sbjct: 297 IRVLMQPLHQMGRAMRDIAD----------GEGDLTKRLAITSQDEFGELA---ESFNRF 343

Query: 563 VERISDMATQIASAAEEQASVTSEITRNTVGIRDVSNDLAQEAHSAAEQAAELSELSHEL 622
           VERI     ++AS A +   V + + + +      S+  A    S A    EL   + E+
Sbjct: 344 VERIHTSIREVASTAAQLGEVATRVVKVSNASMGNSDQQANRTESVAAAINELGAAAQEI 403

Query: 623 EQEIRR 628
            Q   R
Sbjct: 404 AQNAAR 409