Pairwise Alignments

Query, 631 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 626 a.a., Histidine kinase, HAMP region:Cache:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  313 bits (801), Expect = 2e-89
 Identities = 207/635 (32%), Positives = 324/635 (51%), Gaps = 17/635 (2%)

Query: 5   MKLTLKHKLIGASLSAVVVMATALTWFSASQLQQQTSNA-VYTRADAISSTAAKGISDWI 63
           M L  +HK++ A+ + VVV+A AL       LQ++T N  + +         A  + +W+
Sbjct: 1   MNLKFRHKILLAA-AGVVVLAFALFTLYNDYLQRKTINQNLESSVGQAGQLTASSVQNWL 59

Query: 64  SIRKSISTAFNAHIEAQNVVPYLQ----QARNAGGFDDIFYGTTDGAMYRSHPERNRADY 119
           S R  +      ++  Q V   L     Q+     F   + G + G   +       A Y
Sbjct: 60  SGRILVLENLTQNVAFQGVNSDLSGLVSQSALVSTFQFTYVGDSKGTFTQRPNVDMPAGY 119

Query: 120 DPRTRPWYKDAASAGKQIITTAYSDAITGALLVTIAEPVRLNGNMSGVVGADVLIDQLIA 179
           DPR RPWYK    AGK I++  Y  ++ G L+VTIA PV+  G ++GVVG D+ +D L+ 
Sbjct: 120 DPRQRPWYKSTVDAGKTILSAPYLASV-GGLVVTIASPVKAAGQVTGVVGGDLSLDTLVK 178

Query: 180 DVISMDAGKNAQTMLIDGQNGSFLAHPDKSLLLKPVTTLSSALDMRTIERAANQGELLAL 239
            + S++ G      L+ G +G  +  PDK  ++K    L      +TI   A   E+   
Sbjct: 179 IINSVEFGGLGYAFLVSG-DGQIIVSPDKEQVMK---NLKDIYPGQTISLDARLREVT-- 232

Query: 240 KLNGVEKFFFFTAV---PDTPWYFAVQMDSDTEYASHSELLTGLITTALLITVIVVVIVS 296
            LNG ++   FT +   P   WY  + +D D  YA  S+  +  +   L+   ++ +++S
Sbjct: 233 -LNGQQRLLSFTPITGLPSADWYIGLSIDKDKAYAPLSQFRSSAMVAVLIAVAVIALLLS 291

Query: 297 WLVSFLFRDLGRVSKALEEIASGDADLTQRLEPRSDDEVGQLASNFNTFVSNMHTMVLKL 356
            L+  L R L  + +A+++IA G+ DLT+RL  +  DE   L  +FN FV  +H  ++++
Sbjct: 292 LLIRALMRPLTDMGRAMQDIAQGEGDLTRRLSIQGKDEFAALGGSFNQFVERVHASIVEV 351

Query: 357 SHVSAALAQQSKVTAAQAEERSSRIRLQQDEINMVATAINEMAAATQEIAGNADHTAQNA 416
           S  +  +   S+     +         Q    N VA AINE+ AATQEIA NA   +  A
Sbjct: 352 SSATLQVHDLSQRVVNSSNSSIVGFDEQSARTNNVAAAINELGAATQEIARNASDASIQA 411

Query: 417 GEAVTACVHGAGQVTQTQRSIQSLAEEVQVATEVIQELEAHGHQISTILSTIQNIAEQTN 476
            EA      G   V +T  ++ +L+ ++  +   I++L A    I  IL  I+ I++QTN
Sbjct: 412 SEARNQAEDGQVVVEKTIHAMSALSAKISDSCTQIEQLNASTENIGHILDVIKGISQQTN 471

Query: 477 LLALNAAIEAARAGEQGRGFAVVADEVRVLSQRTHASTKEIQQMIETLQATTGKAVGIMD 536
           LLALNAAIEAARAGE GRGFAVVADEVR L+ RT  S  EI +MI +LQ+ +  AV  M+
Sbjct: 472 LLALNAAIEAARAGEAGRGFAVVADEVRNLAHRTQTSADEIHKMIGSLQSGSQHAVLNMN 531

Query: 537 DSRRLADTSVDDANEASVSLEQIHKTVERISDMATQIASAAEEQASVTSEITRNTVGIRD 596
           +S+  +  SV+ AN+A   L  + + +  I  M   +A+A EEQ +V   +  +   I  
Sbjct: 532 ESQTSSQESVEVANQAGSRLRDVTRRIGDIDGMNQSVAAATEEQTAVVETLNIDINQINT 591

Query: 597 VSNDLAQEAHSAAEQAAELSELSHELEQEIRRFKL 631
           ++       +   +  A LS+ +  L+Q +  FK+
Sbjct: 592 LNQQGVANLNETLKDCAALSQQAGRLKQLVDSFKI 626