Pairwise Alignments

Query, 631 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 665 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  231 bits (590), Expect = 6e-65
 Identities = 178/604 (29%), Positives = 288/604 (47%), Gaps = 39/604 (6%)

Query: 55  AAKGISDWISIRKSISTAFNAHIEAQNVVPYLQQARNAGG-FDDIFYGTTDGAMYRSHPE 113
           A  G+ DW +  K+  +   +  + Q +V Y +   +       +F+G+ +   Y     
Sbjct: 74  AEPGLVDWFTQYKARGSNLASDAQYQRIVQYFKYFSDKDADIKSVFFGSANTFEYFDLNG 133

Query: 114 RNRAD--YDPRTRPWYKDAASAGKQIITTAYSDAITGALLVTIAEPVR-LNGNMSGVVGA 170
           R   D  Y    RPW+++A   G   +     DA  G++  T+  PV   NG + G+ G 
Sbjct: 134 RYDGDPNYYTNKRPWWQEALDKGGLFVGDPAVDANDGSISATVKTPVYGANGQLLGIGGM 193

Query: 171 DVLID----QLIADVISMDAGKNAQTMLIDGQNGSFLAHPDKSLLLKPVTTLSSALDMRT 226
           D+LID     L+A +    +G   Q  L+ G +G  +  P  +    P + +   +D   
Sbjct: 194 DILIDTIGKSLLAPIKYQGSG---QAFLMTG-DGKLVYFPGFNESFPPGSAIQK-VDNNG 248

Query: 227 IERAANQGELLALKLNGV---------EKFFFFTAVPDTP---WYFAVQMDSDTEYASHS 274
            E     G+L+  + +G          ++  F     D P   W+ A  +  +   A   
Sbjct: 249 SEGFTALGQLMQRQSSGFTDVVYQGSPQRVAFVEVAGDYPKQKWHLAFMLPHEVIEAPVR 308

Query: 275 ELLTGLITTALLITVIVVVIVSWLVSFLFRDLGRVSKALEEIASGDADLTQRLEPRSDDE 334
           +        +L I ++V V V  L+  L R L  +  A++ +ASG+ DL++R++ + +DE
Sbjct: 309 DAFWNACLMSLGIILLVGVTVWLLLLPLRRQLESLLGAMDNMASGEGDLSRRIDIQREDE 368

Query: 335 VGQLASNFNTFVSNMHTMVLKLSHVSAALAQQSKVTAAQAEERSSRIRLQQDEINMVATA 394
           +G +A  FN F + +  M+ +   ++  +           +     +  Q+ +I+ VA A
Sbjct: 369 LGLMADAFNRFAAKVQQMLRQTRDLTRDVDDGIVEARKICDVAVGAVSRQKAQIDSVAAA 428

Query: 395 INEMAAATQEIAGNADHTAQNAGEAVTACVHGAGQVTQTQRSIQSLAEEVQVATEVIQEL 454
             EMA  +QE+A +A  TA  A  A T    G   V +    I++L+  V  A  VI+EL
Sbjct: 429 AIEMAHTSQEMAASAQRTADFAETAQTQADDGKQIVAEATSGIETLSSRVIEAAAVIKEL 488

Query: 455 EAHGHQISTILSTIQNIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLSQRTHAST 514
                +I  +LS I+NIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR L+ RT  ST
Sbjct: 489 RGSSEKIGEVLSVIRNIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQDST 548

Query: 515 KEIQQMIETLQATTGKAVGIMDDSRRLADTSVDDANEASVSLEQIHKTVERISD------ 568
             IQ +I+ LQ +  +A  +M       +  V+DA    +   Q+  ++ +I+D      
Sbjct: 549 ANIQGIIQRLQQSAMEAESVM-------EAGVNDAKRGQLLTSQVQDSLGKITDAIGAIL 601

Query: 569 -MATQIASAAEEQASVTSEITRNTVGIRDVSNDLAQEAHSAAEQAAELSELSHELEQEIR 627
              T+I  A  +QA V  E+ +N   +R +S+D    +   A       +L+H L   I 
Sbjct: 602 QQTTEITVAIGQQAVVADEVAQNVENVRGLSDDSHSASQELAVSLKAFEQLTHALSGNIS 661

Query: 628 RFKL 631
           +F++
Sbjct: 662 QFRV 665