Pairwise Alignments

Query, 631 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 705 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  235 bits (600), Expect = 4e-66
 Identities = 168/535 (31%), Positives = 269/535 (50%), Gaps = 28/535 (5%)

Query: 118 DYDPRTRPWYKDAASAGKQIITTAYSDAITG---ALLVTIAEPVRLNGNMSGVVGADV-- 172
           ++  R   WY  A    +  +   Y   I+    AL+ ++  PV + G+  GV+G DV  
Sbjct: 176 EFGVREAEWYLCAKDTKQPCLMEPYLYEISPGNTALMTSLTVPVVVGGSFRGVIGVDVNL 235

Query: 173 -----LIDQLIADVISMDAGKNAQTMLIDGQNGSFLAHPDKSLLLKPVTTLSSALDMRTI 227
                LID+L A   S+  GK   T+L   Q G  +A        +P+    +      +
Sbjct: 236 PVFQKLIDELSA---SLYQGKAKVTLL--SQKGLVVAASHYDKKARPLGESIAPSLASQL 290

Query: 228 ERAANQGELLALKLNGVEKFFFFTAVPDTPWYFAVQMDSDTEY-----------ASHSEL 276
                QG  L    N +  +     +    W   +++     Y           A  S L
Sbjct: 291 TGLHRQGGYLEQGDNIIVAYPIEIPLAKAQWSLVIEVAKADAYQAANAMDKAMSAMASSL 350

Query: 277 LTGLITTALLITVIVVVIVSWLVSFLFRDLGRVSKALEEIASGDADLTQRLEPRSDDEVG 336
            + L+   +++++I VV +S ++  +   L  +   +E +AS + DLTQ++   S  E+ 
Sbjct: 351 GSLLLIVGVIVSLIAVVTISLVIRSIVAPLKVIQSRVENLASAEGDLTQQVTVESHAELI 410

Query: 337 QLASNFNTFVSNMHTMVLKLSHVSAALAQQSKVTAAQAEERSSRIRLQQDEINMVATAIN 396
            L    N F++ +  ++ +L  +++    +S+V A  A++  + +  Q  +I  V TA+N
Sbjct: 411 ALGGGINGFINKLRLLIGELKELASRSQAESQVAAEIAQQTHNSVNRQYSDIESVVTAVN 470

Query: 397 EMAAATQEIAGNADHTAQNAGEAVTACVH-GAGQVTQTQRSIQSLAEEVQVATEVIQELE 455
           EM+A   E+A  ++ TA    EA+T  V  G   ++Q    +  +++E  +A E + ++ 
Sbjct: 471 EMSATALEVAKASEQTASET-EAMTLNVKAGEDSLSQAMGYVTHMSQESLLAKEAVGKVA 529

Query: 456 AHGHQISTILSTIQNIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLSQRTHASTK 515
                IS IL  I  IAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR L+ +T +ST 
Sbjct: 530 ESSTNISKILEVISAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALASKTQSSTD 589

Query: 516 EIQQMIETLQATTGKAVGIMDDSRRLADTSVDDANEASVSLEQIHKTVERISDMATQIAS 575
           EI ++IE LQ     A  I+D     A  +V     A  SL  I   ++ +S   T IA+
Sbjct: 590 EIGKLIEALQREVNSASQIIDQGVDGAQRAVAQTESALSSLNTIVNQIQEVSSQVTHIAT 649

Query: 576 AAEEQASVTSEITRNTVGIRDVSNDLAQEAHSAAEQAAELSELSHELEQEIRRFK 630
           AAEEQ++VT E++RN  GI D +++LA+ A  A + +A L+ L  +  Q++ + K
Sbjct: 650 AAEEQSAVTEEVSRNITGISDSASELARLADEAQQSSASLAGLVEQQHQQLGKLK 704