Pairwise Alignments

Query, 631 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 640 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  268 bits (684), Expect = 7e-76
 Identities = 181/644 (28%), Positives = 313/644 (48%), Gaps = 22/644 (3%)

Query: 4   IMKLTLKHKLIGASLSAVVVMATALTWFSASQLQQQTSNAVYTRA-DAISSTAAKGISDW 62
           ++KL ++ K++ A+L++VV+    ++ ++ S  ++   ++   R   A+    A  I   
Sbjct: 1   MLKLNIRRKVVLATLASVVLSIFLISLYAMSNSREIILDSTLNRELPAVLGEVANDIDAQ 60

Query: 63  ISIRKSISTAFNAHIEAQNVV----PYLQQA----------RNAGGFDDIFYGTTDGAMY 108
           + +  ++S     ++E Q ++    P   QA          +  G         T G  +
Sbjct: 61  LLMPITVSKVMANNLEYQAMIRQGEPEASQATLIASLANIRQRFGAITAFLVSNTTGRYF 120

Query: 109 RSHPERNRADYDPRTRPWYKDAASAGKQIITTAYSDAITGALLVTIAEPVRLNGNMSGVV 168
                            W+     +GK    +   D +     + I   V++ G  SGV 
Sbjct: 121 THEGLFKTVSPSDDRDAWFYRFLGSGKDYDLSIDVDDLNQTPTLFINYLVQIEGKPSGVA 180

Query: 169 GADVLIDQLIADVISMDAGKNAQTMLIDGQNGSFLAHPDKSLLLKPVTTLSSALDMRTIE 228
           G  + ++ L  ++     G+  +  L DG NG    H       K +    SAL ++  +
Sbjct: 181 GVGLSLNSLADNIKQYKIGEQGRVYLTDG-NGQIKIHGQSQFAGKQL----SALGIKDPQ 235

Query: 229 RAANQGELLALKL--NGVEKFFFFTAVPDTPWYFAVQMDSDTEYASHSELLTGLITTALL 286
              +Q      +   NGV+       +P   WY   ++  D  + + ++    L    L+
Sbjct: 236 ALLSQQTFATSEYDNNGVDTLVASRYIPSIGWYLIAEVPQDELFGAINKASWQLALMGLI 295

Query: 287 ITVIVVVIVSWLVSFLFRDLGRVSKALEEIASGDADLTQRLEPRSDDEVGQLASNFNTFV 346
           +  I++   +WL++ L    G ++  L+ I  G+ DL+ RL+    DE G +A+++N FV
Sbjct: 296 LAAIIMFTSAWLINRLISPFGELADMLKSIGEGEGDLSLRLDDSRQDETGSMAASYNQFV 355

Query: 347 SNMHTMVLKLSHVSAALAQQSKVTAAQAEERSSRIRLQQDEINMVATAINEMAAATQEIA 406
           + +   +  +S  +  L Q  +    QA+     I  Q  +I  VATAI+EM    QEIA
Sbjct: 356 TYLSKTLQSVSATANDLFQAVERIDNQAKHMEHEINDQVSKIEQVATAIHEMGMTAQEIA 415

Query: 407 GNADHTAQNAGEAVTACVHGAGQVTQTQRSIQSLAEEVQVATEVIQELEAHGHQISTILS 466
            +A++ A+NA  A  +   G   V  T  S+ S++E++   +E + +L      I T+L 
Sbjct: 416 SSANNAAENAQVADQSVNQGNQSVQNTIASVASMSEQLLTTSETVSQLAEDASSIDTVLE 475

Query: 467 TIQNIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLSQRTHASTKEIQQMIETLQA 526
            I+ ++EQTNLLALNAAIEAARAGEQGRGFAVVADEVR L+ R+HAST++I+ +IE LQA
Sbjct: 476 VIRGVSEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRSHASTEDIRHIIEKLQA 535

Query: 527 TTGKAVGIMDDSRRLADTSVDDANEASVSLEQIHKTVERISDMATQIASAAEEQASVTSE 586
            T + V  +  S   +  S  +A+ +   L  I + ++ +S+M+ QIA+A EEQ++V  E
Sbjct: 536 KTTEVVNAIGQSTNQSQQSQQEASLSGEHLHSIAENIQAMSEMSMQIATATEEQSNVVGE 595

Query: 587 ITRNTVGIRDVSNDLAQEAHSAAEQAAELSELSHELEQEIRRFK 630
           I  +   I D+S   +      +   ++L E++ +L + + RFK
Sbjct: 596 INPHVTAIADISRSSSDVVRQTSLDCSDLREMAVQLNELVSRFK 639