Pairwise Alignments

Query, 631 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 632 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  275 bits (702), Expect = 6e-78
 Identities = 183/640 (28%), Positives = 318/640 (49%), Gaps = 30/640 (4%)

Query: 10  KHKLIGASLSAVVVMATALTWFSASQLQQQTSNAVYTRADAISSTAAKGISDWISIRKSI 69
           K  L+ + ++ V +      W S  Q+++ T   V  +   ++   +  ++ W   +   
Sbjct: 4   KKSLVASMVTLVALCLLISNWLSYVQIKEATIARVNDKLTGVTRNESAKVATWFGAKAQA 63

Query: 70  STAFNAHIEA----QNVVPYLQQARNAGGFDDIFYGTTDGAMYRSHP-------ERNRAD 118
                 H        N V   + A +  G   I++G  DG+ Y +         +     
Sbjct: 64  MDELARHYRLGSYQDNYVNTARLATDLSGVARIYFGFDDGSAYSTETGDKWLNGKAIPGK 123

Query: 119 YDPRTRPWYKDAASAGKQIITTAYSDAITGALLVTIAEPVRLNGNMSGVVGADVLIDQLI 178
           YDPRTRPWY+   +  +  +T  Y D  +G  +++I     L     GVV  D+ +  L 
Sbjct: 124 YDPRTRPWYQQGKATTQLDVTDIYIDDGSGHKVISI-----LKNLGDGVVLGDIELTYL- 177

Query: 179 ADVISMDAGKNAQTMLIDGQNGSFLAHPDKSLLLKPVTTLSSALDMRTIERAANQGELLA 238
            DV+S      A  ++ D Q G  LA    +L+    +  S     +  ++     E++ 
Sbjct: 178 HDVVSAIDYPGAVALITD-QTGKVLASESPTLVSG--SRFSDFGLPQVQQKIIGSDEVMQ 234

Query: 239 -LKLNGVEKFFFFTAVP---DTPWYFAVQMDSDTEYASHSELLTGLITTALLITVIVVVI 294
             +++GV+K  F  A+P      W+  + +D    YA   + LT  + ++ ++ +  + I
Sbjct: 235 EYRIDGVDKLGFSKAIPLVNGKQWFLFIGLDKSNAYAVVDQALTSALVSSAIMLLCAISI 294

Query: 295 VSWLVSFLFRDLGRVSKALEEIASGDADLTQRLEPRSDDEVGQLASNFNTFVSNMHTMVL 354
           +  ++  L+R +  +   + E++ G+ DLT+RLE   +D++GQ++   N F++N+  M+ 
Sbjct: 295 LLGVLYLLYRPILSLKAMVTELSKGNGDLTKRLEIHCEDDLGQISMGINQFIANLQAMMR 354

Query: 355 KLSHVSAALAQQSKVTAAQAEERSSRIRLQQDEINMVATAINEMAAATQEIAGNADHTA- 413
           ++   SA ++   +    + E     +     E   +  A+ EM+A   ++A N   TA 
Sbjct: 355 EVLQASAHISGSVERLNGETETNRHILSAHTKETEQIVAAVEEMSATANDVAQNGSETAS 414

Query: 414 --QNAGEAVTACVHGAGQVTQTQRSIQSLAEEVQVATEVIQELEAHGHQISTILSTIQNI 471
             Q   E   A      Q T+T   +  L  EV+   + I +++     I+ +L  I +I
Sbjct: 415 FTQLTNEQALASKQVVAQATET---VNRLVREVEHTADKIGQIDRDTINITQVLKVIGDI 471

Query: 472 AEQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLSQRTHASTKEIQQMIETLQATTGKA 531
           A+QTNLLALNAAIEAARAGEQGRGFAVVADEVR L+ RT  ST EI++ +  L+  +  A
Sbjct: 472 ADQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAARTQDSTAEIEETLSNLRDASNSA 531

Query: 532 VGIMDDSRRLADTSVDDANEASVSLEQIHKTVERISDMATQIASAAEEQASVTSEITRNT 591
           +  M+ +++    +       +  L+ I  +V +I+D+ TQIA+AAEEQ+SV++EITRN 
Sbjct: 532 IHSMEVTKQTCLETASTTERVATDLDAIGSSVNQINDLNTQIATAAEEQSSVSAEITRNM 591

Query: 592 VGIRDVSNDLAQEAHSAAEQAAELSELSHELEQEIRRFKL 631
             I D++N+LA+   S+  +   L+  + +LEQ + +FKL
Sbjct: 592 SAICDMANELARSGESSRNETVNLATANQQLEQIVGQFKL 631