Pairwise Alignments

Query, 631 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 638 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  272 bits (695), Expect = 4e-77
 Identities = 166/509 (32%), Positives = 278/509 (54%), Gaps = 11/509 (2%)

Query: 126 WYKDAASAGKQIITTAYSDAITGA-LLVTIAEPVRLNGNMSGVVGADVLIDQLIADVISM 184
           W+ +  ++G + +   +++A     L +   +P     N  G+VG    +D ++  + S 
Sbjct: 138 WFFNYKNSGTERMLNVFTEANGEVKLFINYQQP-----NDRGLVGLAKSLDDMVRLLKSF 192

Query: 185 DAGKNAQTMLIDGQNGSFLAHPDKSLLLKPVTTLSSALDMRTIERAANQGE--LLALKLN 242
                    L+D + G    H D S + K   +LSS           N+G+  L   +L+
Sbjct: 193 KIEDTGFVYLVDAK-GDVKLHSDTSQIGK--ASLSSLYGGNVTRELLNKGDFGLTQTELD 249

Query: 243 GVEKFFFFTAVPDTPWYFAVQMDSDTEYASHSELLTGLITTALLITVIVVVIVSWLVSFL 302
           G       + +P   WY   Q+     +A   E    ++   +LI    + + +++ + +
Sbjct: 250 GETLLVASSYIPSMDWYLVAQVPRAEVFALLEESAYQILVWTVLIAAAFIGLSTFVSASV 309

Query: 303 FRDLGRVSKALEEIASGDADLTQRLEPRSDDEVGQLASNFNTFVSNMHTMVLKLSHVSAA 362
            + + +V+  L++I  G+ DL QRL    +DE+ QLA  FN+F+  +   +++++  S  
Sbjct: 310 SQPIAKVADMLQDIGQGEGDLRQRLPVEGNDELAQLAKGFNSFIEKIQHSIIEVTDTSVQ 369

Query: 363 LAQQSKVTAAQAEERSSRIRLQQDEINMVATAINEMAAATQEIAGNADHTAQNAGEAVTA 422
           L+  +K  A QA++     +LQ+D+  MV TAINEM A   EIAGNA   A NA +A  A
Sbjct: 370 LSHAAKDVANQAQQTQDDSQLQKDQTMMVVTAINEMGATVHEIAGNAAQAADNAKDADNA 429

Query: 423 CVHGAGQVTQTQRSIQSLAEEVQVATEVIQELEAHGHQISTILSTIQNIAEQTNLLALNA 482
             +G   VT+ + +I  L+++V+    VI+ L  H   I +IL  I+ +++QTNLLALNA
Sbjct: 430 SSNGQIVVTRARDTINQLSQDVEQVGNVIESLATHTTSIGSILDVIRAVSDQTNLLALNA 489

Query: 483 AIEAARAGEQGRGFAVVADEVRVLSQRTHASTKEIQQMIETLQATTGKAVGIMDDSRRLA 542
           AIEAARAGE GRGFAVVA+EVR L+ RT AST E+Q+MI+ LQ+   +AV  M  S+  +
Sbjct: 490 AIEAARAGEAGRGFAVVAEEVRNLASRTAASTDEVQKMIDNLQSEAARAVEAMTQSKSRS 549

Query: 543 DTSVDDANEASVSLEQIHKTVERISDMATQIASAAEEQASVTSEITRNTVGIRDVSNDLA 602
              V   +EAS +L +I + +  I+DM  Q+A+A EEQ++V  +I RN   I +++   +
Sbjct: 550 QEGVQAVDEASHTLTEISQQIGAITDMNIQVAAATEEQSTVVEDINRNVTEISEITQRTS 609

Query: 603 QEAHSAAEQAAELSELSHELEQEIRRFKL 631
           + + + A+ +  L++L+H L+  +  FK+
Sbjct: 610 ETSQAVAQASQSLNQLAHRLDTLVAGFKV 638



 Score = 27.3 bits (59), Expect = 0.002
 Identities = 12/42 (28%), Positives = 26/42 (61%)

Query: 433 TQRSIQSLAEEVQVATEVIQELEAHGHQISTILSTIQNIAEQ 474
           +QRS + + E+  + +E+   L+A  +++   ++T+ N AEQ
Sbjct: 31  SQRSAKEVVEQRMLTSELPNTLQAIRNKVEMDIATLMNAAEQ 72