Pairwise Alignments

Query, 631 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 623 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  434 bits (1115), Expect = e-126
 Identities = 256/626 (40%), Positives = 376/626 (60%), Gaps = 9/626 (1%)

Query: 8   TLKHKLIGASLSAVVVMATALTWFSASQLQQQTSNAVYTRADAISSTAAKGISDWISIRK 67
           +LK K++ + + A+ ++   L+W S S  +         +   +    A+ I +W++ R+
Sbjct: 5   SLKQKILISVVIALSLVIGLLSWQSYSSQKSLLLQNSLEQVQRLGDQQAERIQEWLAGRQ 64

Query: 68  SISTAFNAHIEAQNVVPYLQQARNAGGFDDIFYGTTDGAMYRSHPERNRADYDPRTRPWY 127
            I  A  + +E  ++   LQQA+ +G F   +YGT  G M  S    +R  YDPRTRPWY
Sbjct: 65  DIVGALASKVEGDSLNA-LQQAQASGRFQLTYYGTQAGQMLDSDLSIDRTGYDPRTRPWY 123

Query: 128 KDAASAGKQIITTAYSDAITGALLVTIAEPVRLNGNMSGVVGADVLIDQLIADVISMDAG 187
           K A +    I+T  Y D     L+VT+A+ V       GVVG D+ I  L+  V  M   
Sbjct: 124 KQATNERGLILTKPYVDVAYNVLVVTMAQAVS-----QGVVGGDLSIASLVESVNRMTLP 178

Query: 188 KNAQTMLIDGQNGSFLAHPDKSLLLKPVTTLSSALDMRTIERAANQGELLALKLN--GVE 245
            N   +++  Q+G+ +A+ D S  +KPV+ + + L+    +++   G  L +       +
Sbjct: 179 ANGYAIMMH-QDGTVIAYKDTSKAMKPVSDIDNDLNHNLPQQSRQAGTWLPMYFEHESRD 237

Query: 246 KFFFFTAVPDTPWYFAVQMDSDTEYASHSELLTGLITTALLITVIVVVIVSWLVSFLFRD 305
           K  +   +P+T W   + +D +T  A  + LL   +  + ++ ++ V+ +SWLV+ L   
Sbjct: 238 KLVWGVDIPNTDWELVIVLDKETLEAPLTNLLLTQLGLSAVVLLLSVLAISWLVNLLLGP 297

Query: 306 LGRVSKALEEIASGDADLTQRLEPRSDDEVGQLASNFNTFVSNMHTMVLKLSHVSAALAQ 365
           LGRVS+AL  IA G+ DLTQR+E  + DEVG LA +FN FV + H ++  + H++  L  
Sbjct: 298 LGRVSQALARIADGNGDLTQRIEVDTQDEVGVLADSFNRFVGSQHQLISHIRHLAGELDA 357

Query: 366 QSKVTAAQAEERSSRIRLQQDEINMVATAINEMAAATQEIAGNADHTAQNAGEAVTACVH 425
            ++ +        + ++ QQ E+ MVATA+ EMA+AT EIA NA++TA  A ++  +   
Sbjct: 358 DAEHSLKTNHLAVAELQRQQQEVAMVATAVTEMASATNEIAANAENTATAAQQSAASSFQ 417

Query: 426 GAGQVTQTQRSIQSLAEEVQVATEVIQELEAHGHQISTILSTIQNIAEQTNLLALNAAIE 485
           G   V +T+ SI SLA+EV  ATEVI++L  H   IS+IL+TIQ IAEQTNLLALNAAIE
Sbjct: 418 GKELVNKTRSSINSLADEVTQATEVIEDLSRHAQSISSILATIQGIAEQTNLLALNAAIE 477

Query: 486 AARAGEQGRGFAVVADEVRVLSQRTHASTKEIQQMIETLQATTGKAVGIMDDSRRLADTS 545
           AARAGEQGRGFAVVADEVRVLS+RT  ST+E+   IETLQ TT KAV +M+ S+ LA  S
Sbjct: 478 AARAGEQGRGFAVVADEVRVLSRRTQDSTQEVHATIETLQRTTAKAVSLMESSQMLAGNS 537

Query: 546 VDDANEASVSLEQIHKTVERISDMATQIASAAEEQASVTSEITRNTVGIRDVSNDLAQEA 605
           V+DAN A  +LE+I + V  ISDMA QIA+AAEEQ  VT EIT+NTV I+DV++++ + A
Sbjct: 538 VEDANAAVKALEEITQAVNVISDMAGQIATAAEEQTQVTGEITQNTVAIKDVTDEITEAA 597

Query: 606 HSAAEQAAELSELSHELEQEIRRFKL 631
            S   QA  L   +++L  ++  F L
Sbjct: 598 KSDLTQAQALKARANDLNAQVATFIL 623