Pairwise Alignments

Query, 631 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 642 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  276 bits (706), Expect = 2e-78
 Identities = 177/514 (34%), Positives = 270/514 (52%), Gaps = 11/514 (2%)

Query: 121 PRTRPWYKDAASAGKQIITTAYSDAITGA-LLVTIAEPVRLNGNMSGVVGADVLIDQLIA 179
           P    W+     +G++ +   +++A     L +   +P     N  G+VG    +D ++ 
Sbjct: 137 PAQDGWFFSYRDSGQERMLNVFTEANGEIKLFINYQQP-----NGRGLVGLAKSLDDMVQ 191

Query: 180 DVISMDAGKNAQTMLIDGQNGSFLAHPDKSLLLKPVTTLSSALDMRTIERAANQGE--LL 237
            + S    +     L+D + G    HPD S + K  T+L S      I    N+ +  L+
Sbjct: 192 LLDSFKIEETGFVYLVDAK-GEVKLHPDPSQIGK--TSLKSLYSAANIGSLLNRSDFNLI 248

Query: 238 ALKLNGVEKFFFFTAVPDTPWYFAVQMDSDTEYASHSELLTGLITTALLITVIVVVIVSW 297
             ++ G + F   + +P   WY   Q+     +A   + +  ++   L+I    +++   
Sbjct: 249 DTEIQGEKTFVASSYIPSMDWYLVAQVPEAEVFALLRDAVYQILIWTLIIAAGFIMLAIV 308

Query: 298 LVSFLFRDLGRVSKALEEIASGDADLTQRLEPRSDDEVGQLASNFNTFVSNMHTMVLKLS 357
           +   + R + +V+    +I  G+ DL QRL     DE+ QLA  FN+F+S +   V++++
Sbjct: 309 VAGSVSRPIAQVAAMFRDIGEGEGDLRQRLPVNGKDEIAQLAQGFNSFISKIQDSVIEVA 368

Query: 358 HVSAALAQQSKVTAAQAEERSSRIRLQQDEINMVATAINEMAAATQEIAGNADHTAQNAG 417
             S  L   +K  + QA++       Q+D   MV TAINEM A   EIA NA   A  A 
Sbjct: 369 QTSEQLGLSAKDVSNQAQQTLEDSHEQKDRTMMVVTAINEMGATVNEIASNAAQAAVAAK 428

Query: 418 EAVTACVHGAGQVTQTQRSIQSLAEEVQVATEVIQELEAHGHQISTILSTIQNIAEQTNL 477
           +A T    G   VT+ + +I  L+ +V+   EVI+ L  H   I  IL  I+ I+EQTNL
Sbjct: 429 DADTESNSGQVVVTRARDTINQLSHDVEQVGEVIESLATHTKSIGGILDVIRAISEQTNL 488

Query: 478 LALNAAIEAARAGEQGRGFAVVADEVRVLSQRTHASTKEIQQMIETLQATTGKAVGIMDD 537
           LALNAAIEAARAGE GRGFAVVADEVR L+ RT AST E+Q MI+ LQ+   +AV  M  
Sbjct: 489 LALNAAIEAARAGEAGRGFAVVADEVRNLASRTAASTNEVQGMIDKLQSEASRAVSAMAQ 548

Query: 538 SRRLADTSVDDANEASVSLEQIHKTVERISDMATQIASAAEEQASVTSEITRNTVGIRDV 597
           SR  +   V   +EAS SL  I K +  ISDM  Q+A+A EEQ++V  +I RN   I D+
Sbjct: 549 SRARSHEGVTAVDEASQSLVGISKRIGLISDMNIQVAAATEEQSTVVEDINRNVTEINDI 608

Query: 598 SNDLAQEAHSAAEQAAELSELSHELEQEIRRFKL 631
           +   A  A +AA+ +  L++L+H L+  + +FK+
Sbjct: 609 TQRTASTAQAAAQASLALNQLAHRLDTLVAKFKV 642