Pairwise Alignments

Query, 631 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 706 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  226 bits (575), Expect = 3e-63
 Identities = 167/565 (29%), Positives = 273/565 (48%), Gaps = 28/565 (4%)

Query: 92  AGGFDDIFYGTTDGAMYRSHPERNRAD--------YDPRTRPWYKDAASAGKQIITTAYS 143
           + G  +I+Y   D      H   + ++        +  R   WY  A    K  +   Y 
Sbjct: 143 SSGVLEIYYTRNDDGTVEHHQVEDSSEKYKTSLNEFGIRESEWYLCAKETLKPCLMEPYL 202

Query: 144 DAITG---ALLVTIAEPVRLNGNMSGVVGADVLID--QLIADVISMDAGKNAQTMLIDGQ 198
             IT    AL+ ++      +    GVVG DV +   Q++ D +S         + +   
Sbjct: 203 YEITPGNTALMTSLTVSAVKHKQFIGVVGVDVNLPVFQVLIDKLSKSLYDGQAKVTLLST 262

Query: 199 NGSFLAHPDKSLLLKPVT-TLSSALDMRTIERAANQGELLALKLNGVEKFFFFTAVPDTP 257
            G  +A    S   +P+  ++   L ++ I    N G  +A     +  +     + +  
Sbjct: 263 RGLVVAASHYSKKARPLAESIDPKLAVQMIALHKNGG-YMANDDEIIVAYPIDIPLANAE 321

Query: 258 WYFAVQMDSDTEYASH-----------SELLTGLITTALLITVIVVVIVSWLVSFLFRDL 306
           W  A+Q+       S            + L + L+   L ++++ VV +S ++  +   L
Sbjct: 322 WSLAIQVPKSMALKSSILLNEKMDDMATSLGSILVIVGLAVSILAVVTISIVIRSVIAPL 381

Query: 307 GRVSKALEEIASGDADLTQRLEPRSDDEVGQLASNFNTFVSNMHTMVLKLSHVSAALAQQ 366
             +   +E +AS D DLTQ +E  S  E+  L   FN+F+  +  ++ +L  ++    ++
Sbjct: 382 RLIQGRVENLASADGDLTQSIEVDSHAELIALGKGFNSFIHKLKDLISELKALAGQTQEE 441

Query: 367 SKVTAAQAEERSSRIRLQQDEINMVATAINEMAAATQEIAGNADHTAQNAGEAVTACVHG 426
           S  +A  AE     +  Q  EI  V TA+NEM+A   E+A  ++ TA    EA++  VH 
Sbjct: 442 SLSSAKIAELTRDSVHRQYGEIESVVTAVNEMSATALEVAKASEQTAAET-EAMSRNVHL 500

Query: 427 AGQ-VTQTQRSIQSLAEEVQVATEVIQELEAHGHQISTILSTIQNIAEQTNLLALNAAIE 485
           + + +T+    + ++++E   A   + ++      IS IL  I +IA QTNLLALNAAIE
Sbjct: 501 SEESLTKAMDYVTTMSQESMQAKVAVSKVAESSTNISRILEVISSIAAQTNLLALNAAIE 560

Query: 486 AARAGEQGRGFAVVADEVRVLSQRTHASTKEIQQMIETLQATTGKAVGIMDDSRRLADTS 545
           AARAGEQGRGFAVVADEVR L+ +T +ST +I  +I+ LQ     A  I+D     A  +
Sbjct: 561 AARAGEQGRGFAVVADEVRALASKTQSSTDDISVLIDALQKEVQSASAIIDKGAERAQMA 620

Query: 546 VDDANEASVSLEQIHKTVERISDMATQIASAAEEQASVTSEITRNTVGIRDVSNDLAQEA 605
           V    +A  SL  +   +E IS   T IA+AAEEQ++VT E+ RN  GI D +++LA+ A
Sbjct: 621 VSQTEQALTSLNSMVSQIEEISAQVTHIAAAAEEQSAVTEEVNRNITGISDSASELARLA 680

Query: 606 HSAAEQAAELSELSHELEQEIRRFK 630
             A + +  L+EL  +  Q++ + K
Sbjct: 681 GEAQQSSVVLAELVKQQHQQLGKLK 705