Pairwise Alignments

Query, 631 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 630 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  506 bits (1303), Expect = e-147
 Identities = 289/631 (45%), Positives = 393/631 (62%), Gaps = 5/631 (0%)

Query: 5   MKLTLKHKLIGASLSAVVVMATALTWFSASQLQQQTSNAVYTRADAISSTAAKGISDWIS 64
           M+ TLK +L+ +SL AV +    L   S+  ++    +      D +++T A+GI  W+ 
Sbjct: 1   MRSTLKTRLLFSSLFAVFITVAVLVSISSYVIRNHAIDNTQGEIDQLANTFAEGIGLWMQ 60

Query: 65  IRKSISTAFNAHIEAQ---NVVPYLQQARNAGGFDDIFYGTTDGAMYRSHPERNRADYDP 121
            RK+  T+    +EA     + PYL QA NA GF   ++G   G MYR  P  N A+YDP
Sbjct: 61  DRKTAITSLKKTVEADPNVQITPYLLQAHNAMGFALTYFGDEQGNMYRQDPALNTANYDP 120

Query: 122 RTRPWYKDAASAGKQIITTAYSDAITGALLVTIAEPVRLNGNMSGVVGADVLIDQLIADV 181
           R RPWY DA +A   ++T  Y  A     +VTIAEPV ++G + GV  A++ IDQL   V
Sbjct: 121 RERPWYMDAKAANAMVMTAPYVSATLKKQVVTIAEPVMVSGRLFGVAAANLTIDQLTDAV 180

Query: 182 ISMDAGKNAQTMLIDGQNGSFLAHPDKSLLLKPVTTLSSALDMRTIERAANQGELLALKL 241
             ++      T+++D   G  ++HP+  L  + +T + S      + + AN   +   +L
Sbjct: 181 QRLEVPGKGYTLMVDTA-GLIISHPNTQLNNQQLTKIDSHFTPSWLSQRANANTMEEREL 239

Query: 242 NGVEKFFFFTAVPDTPWYFAVQMDSDTEYASHSELLTGLITTALLITVIVVVIVSWLVSF 301
           +G  +  +  AVP T W     M+     +  + L   +    + + VI  +++  +   
Sbjct: 240 DGGTQLVYVAAVPSTDWALIFVMNKQEIMSQATSLAWWMSAVGVGLLVIFGLVLVAIFKM 299

Query: 302 LFRDLGRVSKALEEIASGDADLTQRLEP-RSDDEVGQLASNFNTFVSNMHTMVLKLSHVS 360
            F+DL RV+ AL +IA GD DLT R+    S DE+G LAS FN FV  +H M+ ++ +++
Sbjct: 300 QFKDLERVALALNDIAEGDGDLTVRIHTANSHDEIGILASGFNRFVERLHGMISRMHNIA 359

Query: 361 AALAQQSKVTAAQAEERSSRIRLQQDEINMVATAINEMAAATQEIAGNADHTAQNAGEAV 420
             L  Q+K ++A A + S RI +QQDE+ MVATA+ EMA+AT+EIA NA+HTAQ A  AV
Sbjct: 360 GQLEYQAKGSSASAADNSQRIEVQQDEVTMVATAVTEMASATEEIASNAEHTAQTAQNAV 419

Query: 421 TACVHGAGQVTQTQRSIQSLAEEVQVATEVIQELEAHGHQISTILSTIQNIAEQTNLLAL 480
           +   HG  QV Q+Q+SI++LA EV  A  +I EL  H  +I++IL TI  IAEQTNLLAL
Sbjct: 420 SLSNHGQKQVMQSQQSIRNLANEVDTAGRIISELNEHSQKINSILLTISGIAEQTNLLAL 479

Query: 481 NAAIEAARAGEQGRGFAVVADEVRVLSQRTHASTKEIQQMIETLQATTGKAVGIMDDSRR 540
           NAAIEAARAGEQGRGFAVVADEVRVLSQRTH+ST+EIQ MIETLQ T GKAV  M  S  
Sbjct: 480 NAAIEAARAGEQGRGFAVVADEVRVLSQRTHSSTQEIQAMIETLQQTAGKAVKSMTQSHD 539

Query: 541 LADTSVDDANEASVSLEQIHKTVERISDMATQIASAAEEQASVTSEITRNTVGIRDVSND 600
           +A+TSV DAN AS SL QI K +  ISDMA+QIA+AAEEQ SVTSEI RNT  IR+VS +
Sbjct: 540 MAETSVADANSASESLLQISKAINEISDMASQIATAAEEQTSVTSEINRNTESIREVSEN 599

Query: 601 LAQEAHSAAEQAAELSELSHELEQEIRRFKL 631
           L+ EA SA  Q+ EL+ L+  L+QE+ RFKL
Sbjct: 600 LSIEAQSAMVQSQELAHLAASLQQEVSRFKL 630