Pairwise Alignments

Query, 631 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 554 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  228 bits (580), Expect = 7e-64
 Identities = 141/400 (35%), Positives = 219/400 (54%), Gaps = 13/400 (3%)

Query: 244 VEKFFFFTAVPDTPWYFAVQM---DSDTEYASHSELLTGLITTALLITVIVVVIVSWLVS 300
           +EK  F   VP T W         D +     + + +T  +    L+ +++ ++++   +
Sbjct: 156 IEKISFVMMVPGTDWMLGTGAYIDDIEAVVEDYRQTVTEQMAEKSLMILLIALVLTGATA 215

Query: 301 FLFR--------DLGRVSKALEEIASGDADLTQRLEPRSDDEVGQLASNFNTFVSNMHTM 352
           F+           +  ++  L +IA G+ DLT+RL  + +DE+ QL   FN FV  +  +
Sbjct: 216 FVIMVAAHRMVVPIKNMADNLNDIAKGEGDLTKRLSVKGEDEIAQLGRAFNLFVDKLQHI 275

Query: 353 VLKLSHVSAALAQQSKVTAAQAEERSSRIRLQQDEINMVATAINEMAAATQEIAGNADHT 412
           +  ++  +A +   +     Q +  SS++    +E + V TAI EM++   E+A N    
Sbjct: 276 IGDVASATAKVKTAANAIHDQTKVMSSQLLSHNNETDQVVTAITEMSSTASEVAQNTTQV 335

Query: 413 AQNAGEAVTACVHGAGQ-VTQTQRSIQSLAEEVQVATEVIQELEAHGHQISTILSTIQNI 471
           A+ A +A T  V  A + V  +   I +L E++  A   I+ L     +I+++LS I  I
Sbjct: 336 AE-ATQAATGDVANAQRCVDASLEEIAALMEQINHAAGSIKSLSEQSQKINSVLSVIGGI 394

Query: 472 AEQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLSQRTHASTKEIQQMIETLQATTGKA 531
           AEQTNLLALNAAIEAARAGEQGRGFAVVADEVR L+ RT AST EI +M+  L     +A
Sbjct: 395 AEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQASTLEINEMLSALHKLVSQA 454

Query: 532 VGIMDDSRRLADTSVDDANEASVSLEQIHKTVERISDMATQIASAAEEQASVTSEITRNT 591
           V  MD+S++    SV+ +   S SL  +   V  I+DM+TQIA+AA EQ+SVT EI RN 
Sbjct: 455 VKTMDESQQSCVRSVESSRAISESLGSVTSAVTAINDMSTQIATAATEQSSVTEEINRNV 514

Query: 592 VGIRDVSNDLAQEAHSAAEQAAELSELSHELEQEIRRFKL 631
             I+++ N+L   +  AA  +  +S+    L   + +FK+
Sbjct: 515 YAIQEIVNELLHSSEHAARVSQTVSQEGTNLGNLVGQFKI 554